Browse Element(s) Details


Os.9990.1.S1_at

Description gb:AK102025.1
DB_XREF= gi:32987234
TID=Os.9990.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.9990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033080K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033080K13, full insert sequence.
FL= gb:AK102025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0203011/11FolC bifunctional protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01990NANA3+599568..601964LysM domain containing protein, expressed
LOC_Os03g02010Os.52141.1.S1_at11/113+610993..614678DNA cytosine methyltransferase Zmet3, putative, expressed
LOC_Os03g02020Os.7443.1.S1_s_at11/113+615070..617856expressed protein
LOC_Os03g02030Os.9990.1.S1_at11/113+618942..623961FolC bifunctional protein, expressed
LOC_Os03g02040Os.8597.1.S1_at11/113+625299..627814Remorin, C-terminal region family protein, expressed
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0005759cellular_componentmitochondrial matrix
GO:0005829cellular_componentcytosol
GO:0009570cellular_componentchloroplast stroma
GO:0004326molecular_functiontetrahydrofolylpolyglutamate synthase activity
GO:0008841molecular_functiondihydrofolate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9990.1.S1_at--652--7851Chr03:619728..619752 (25 bp)
GGTATGAACAACACAAATTCCAGTG
LOC_Os03g02030
Os.9990.1.S1_at--92--2491Chr03:619701..619725 (25 bp)
AACAGTCTGGTTTTTGAATCACTTC
LOC_Os03g02030
Os.9990.1.S1_at--1135--5231Chr03:619686..619710 (25 bp)
GAATCACTTCCACTGGCAATGGAGT
LOC_Os03g02030
Os.9990.1.S1_at--108--6131Chr03:619665..619689 (25 bp)
GAGTGGCTGAGGACAAATGCCCGAC
LOC_Os03g02030
Os.9990.1.S1_at--598--10371Chr03:619322..619599 (25 bp)
TTTTCAGGTCCTGGTTACTGGCTCC
LOC_Os03g02030
Os.9990.1.S1_at--535--5791Chr03:619215..619239 (25 bp)
GACGCTGAGCCAATTTCGCGGTTTA
LOC_Os03g02030
Os.9990.1.S1_at--714--9271Chr03:619200..619224 (25 bp)
TCGCGGTTTACGTTTGAGATCCCCT
LOC_Os03g02030
Os.9990.1.S1_at--422--10751Chr03:619187..619211 (25 bp)
TTGAGATCCCCTGACGGCAACCGGG
LOC_Os03g02030
Os.9990.1.S1_at--492--5151Chr03:619171..619195 (25 bp)
GCAACCGGGCGGTTACAGGATACAA
LOC_Os03g02030
Os.9990.1.S1_at--109--4951Chr03:619099..619123 (25 bp)
GCATATCGCGTATACTCTTCTTGTT
LOC_Os03g02030
Os.9990.1.S1_at--811--3611Chr03:619080..619104 (25 bp)
CTTGTTATGTGTTTCATGGCTCCTT
LOC_Os03g02030
Target Sequence 
GGTATGAACAACACAAATTCCAGTGAGAACAGTCTGGTTTTTGAATCACTTCCACTGGCAATGGAGTGGCTGAGGACAAA
TGCCCGACNAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGG
TCAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAATTGACGCTGAGCCAATTTCGCGGTTTACGTT
TGAGATCCCCTGACGGCAACCGGGCGGTTACAGGATACAACAATTTCAATTTCAGGTGTTTTGGATTCTATGCTGACCAG
GCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis