Browse Element(s) Details


Os.8597.1.S1_at

Description gb:AK060379.1
DB_XREF= gi:32970397
TID=Os.8597.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-D11, full insert sequence.
FL= gb:AK060379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0204011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01990NANA3+599568..601964LysM domain containing protein, expressed
LOC_Os03g02010Os.52141.1.S1_at11/113+610993..614678DNA cytosine methyltransferase Zmet3, putative, expressed
LOC_Os03g02020Os.7443.1.S1_s_at11/113+615070..617856expressed protein
LOC_Os03g02030Os.9990.1.S1_at11/113+618942..623961FolC bifunctional protein, expressed
LOC_Os03g02040Os.8597.1.S1_at11/113+625299..627814Remorin, C-terminal region family protein, expressed
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8597.1.S1_at--445--2691Chr03:625966..625990 (25 bp)
AAGCTGTCATACATCACTTCATGGG
LOC_Os03g02040
Os.8597.1.S1_at--988--5491Chr03:625741..625765 (25 bp)
GAACAAGCTGGCATTGCTGCACAAG
LOC_Os03g02040
Os.8597.1.S1_at--990--1311Chr03:625652..625676 (25 bp)
AGATGGCCGCCAAGTACCGTGCAAA
LOC_Os03g02040
Os.8597.1.S1_at--324--1171Chr03:625640..625664 (25 bp)
AGTACCGTGCAAAGGGCGAGGCTCC
LOC_Os03g02040
Os.8597.1.S1_at--650--4091Chr03:625616..625640 (25 bp)
CGACGAAGCTGTTCGGGCTCTTGAA
LOC_Os03g02040
Os.8597.1.S1_at--44--3011Chr03:625496..625520 (25 bp)
AATGCATGGCATCCGTGTTTGCGTC
LOC_Os03g02040
Os.8597.1.S1_at--145--10291Chr03:625479..625503 (25 bp)
TTTGCGTCGTGTGTATGTCGTCTAA
LOC_Os03g02040
Os.8597.1.S1_at--1132--8691Chr03:625464..625488 (25 bp)
TGTCGTCTAATTGAAGGGCCATTTG
LOC_Os03g02040
Os.8597.1.S1_at--991--7551Chr03:625449..625473 (25 bp)
GGGCCATTTGGTTTGTATTTTGTCA
LOC_Os03g02040
Os.8597.1.S1_at--1112--6851Chr03:625416..625440 (25 bp)
GTTTGATTTCTGGTGCGTTTTGTAA
LOC_Os03g02040
Os.8597.1.S1_at--926--5231Chr03:625341..625365 (25 bp)
GAATACGCTTATTCTTTCATGAAGA
LOC_Os03g02040
Target Sequence 
AAGCTGTCATACATCACTTCATGGGNAGAATGCNAAAGAAAGCAGAGATNGAGGCTGAGCTGAAAAGGATCGAGCAAGAA
CTGGAGAAGAAGAAGGCGGCGTACGAAGAGAAGCTGAAGAACAAGCTGGCATTGCTGCACAAGACGGCGGAGGAGAAGAG
GGCGCTCACCACGGCGAAGCGTGGCGAGGAGCTGATCATGGCGGAGGAGATGGCCGCCAAGTACCGTGCAAAGGGCGAGG
CTCCGACGAAGCTGTTCGGGCTCTTGAAAGCCTGAGAGAAATCATGAGGAGTTCATCATACATATATGCTGGGATTTGGT
GTTGTTGATTAGTCTGTGAACTTACAGAAATTTGTATATGTGCAATGCATGGCATCCGTGTTTGCGTCGTGTGTATGTCG
TCTAATTGAAGGGCCATTTGGTTTGTATTTTGTCAGTTGGGTGGTTTGATTTCTGGTGCGTTTTGTAAAGGAATTGTGTA
TATGCATAGGGGAGTGCAGGCAGGGGATGATGGATTATGAATACGCTTATTCTTTCATGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis