Browse Element(s) Details


OsAffx.12706.1.S1_at

Description tigr:9631.m00113
TID=OsAffx.12706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0206011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02010Os.52141.1.S1_at11/113+610993..614678DNA cytosine methyltransferase Zmet3, putative, expressed
LOC_Os03g02020Os.7443.1.S1_s_at11/113+615070..617856expressed protein
LOC_Os03g02030Os.9990.1.S1_at11/113+618942..623961FolC bifunctional protein, expressed
LOC_Os03g02040Os.8597.1.S1_at11/113+625299..627814Remorin, C-terminal region family protein, expressed
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02110Os.24954.1.A1_s_at11/113+653032..660226expressed protein
LOC_Os03g02110Os.50528.1.S1_at11/113+653032..660226expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12706.1.S1_at--33--6771Chr03:631582..631606 (25 bp)
GTTAATTGAGATTGTTGGTCCGATG
LOC_Os03g02060
OsAffx.12706.1.S1_at--723--3091Chr03:632538..632562 (25 bp)
AATACAGTATTGAAGAACATCACCA
LOC_Os03g02060
OsAffx.12706.1.S1_at--137--1731Chr03:632559..632583 (25 bp)
ACCATTCCACTCACCGATATTGGGA
LOC_Os03g02060
OsAffx.12706.1.S1_at--341--3331Chr03:632566..632590 (25 bp)
CACTCACCGATATTGGGAACAAATC
LOC_Os03g02060
OsAffx.12706.1.S1_at--413--3291Chr03:632590..632614 (25 bp)
CAAATAACAGTCTATGCGCTGTATA
LOC_Os03g02060
OsAffx.12706.1.S1_at--526--10131Chr03:632613..632637 (25 bp)
TATGCAGTTGAGTCGAGTTATTCAC
LOC_Os03g02060
OsAffx.12706.1.S1_at--37--6111Chr03:632622..632646 (25 bp)
GAGTCGAGTTATTCACTATGTCAGG
LOC_Os03g02060
OsAffx.12706.1.S1_at--667--131Chr03:632632..632656 (25 bp)
ATTCACTATGTCAGGTGGCACAGCT
LOC_Os03g02060
OsAffx.12706.1.S1_at--987--1051Chr03:632644..632668 (25 bp)
AGGTGGCACAGCTGAATAATTTCAA
LOC_Os03g02060
OsAffx.12706.1.S1_at--428--2171Chr03:632661..632685 (25 bp)
AATTTCAACAAGCAAACGGTTTCTG
LOC_Os03g02060
OsAffx.12706.1.S1_at--828--3231Chr03:632669..632693 (25 bp)
CAAGCAAACGGTTTCTGCATTCAAC
LOC_Os03g02060
Target Sequence 
GTTAATTGAGATTGTTGGTCCGATGGGGACAAATACAGTATTGAAGAACATCACCATTCCACTCACCGATATTGGGAACA
AATCAAATAACAGTCTATGCGCTGTATATGCAGTTGAGTCGAGTTATTCACTATGTCAGGTGGCACAGCTGAATAATTTC
AACAAGCAAACGGTTTCTGCATTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis