Browse Element(s) Details


Os.33311.1.S1_at

Description gb:AK066973.1
DB_XREF= gi:32976991
TID=Os.33311.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full insert sequence.
FL= gb:AK066973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g021005/11Valyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02030Os.9990.1.S1_at11/113+618942..623961FolC bifunctional protein, expressed
LOC_Os03g02040Os.8597.1.S1_at11/113+625299..627814Remorin, C-terminal region family protein, expressed
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02110Os.24954.1.A1_s_at11/113+653032..660226expressed protein
LOC_Os03g02110Os.50528.1.S1_at11/113+653032..660226expressed protein
LOC_Os03g02120NANA3+661125..665059transposon protein, putative, Mariner sub-class
LOC_Os03g02130Os.38395.3.S1_x_at8/113+666915..668224hypothetical protein
LOC_Os03g02130Os.38395.2.S1_x_at6/113+666915..668224hypothetical protein
LOC_Os03g02130Os.38395.1.S1_at6/113+666915..668224hypothetical protein
LOC_Os03g02140Os.38395.4.S1_x_at6/113+671415..675170transposon protein, putative, Mutator sub-class
LOC_Os03g02150Os.16247.1.S1_s_at11/113+676538..687033Adaptin N terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33311.1.S1_at--1059--3591Chr03:651578..651602 (25 bp)
CATTGTTCAATGTTATCAGTCTCTA
LOC_Os03g02100
Os.33311.1.S1_at--371--3771Chr03:651598..651622 (25 bp)
CTCTAGTTGTGACTCTTTCTTCTAT
LOC_Os03g02100
Os.33311.1.S1_at--846--5711Chr03:651608..651632 (25 bp)
GACTCTTTCTTCTATATCATCTCTA
LOC_Os03g02100
Os.33311.1.S1_at--526--1211Chr03:651823..651847 (25 bp)
AGTTTATCTGTATACCTCCAACTCC
LOC_Os03g02100
Os.33311.1.S1_at--176--9031Chr03:652018..652042 (25 bp)
TGCAACATGCCCTATCACAGAAAAT
LOC_Os03g02100
Os.33311.1.S1_at--906--1151Chr03:652178..652202 (25 bp)
AGTCAGAAATCCCTGTTGTGATTTT
NONE
Os.33311.1.S1_at--280--10591Chr03:652212..652236 (25 bp)
TTCTCTTTGTGGAAGTTTCATCTAA
NONE
Os.33311.1.S1_at--596--3131Chr03:652237..652261 (25 bp)
AATTTTGTACTGTTGCCTTAGTCAT
NONE
Os.33311.1.S1_at--36--4431Chr03:652281..652305 (25 bp)
GCCAGATTTGTGATTTTGCAGCTTG
NONE
Os.33311.1.S1_at--1152--10731Chr03:652296..652320 (25 bp)
TTGCAGCTTGAAGATATATCCACAG
NONE
Os.33311.1.S1_at--516--6791Chr03:652328..652352 (25 bp)
GTTTTGGTTGTACGACATTGCATTT
NONE
Target Sequence 
CATTGTTCAATGTTATCAGTCTCTAGTTGTGACTCTTTCTTCTATATCATCTCTAAAGATCCTGATAGAGAGTGATGAAA
CACCACCTGACTGTGCAACAGCTGTTGTGAACAAAGTTTATCTGTATACCTCCAACTCCAAGGAGCTCTCAATGCAGAAG
TTGAGCTTGAAAAGCTAAGGAAAAAGAGAGAAGAAATTCAAAAGCTGCAACATGCCCTATCACAGAAAATGGAAGCTTCC
GGTTATAAAGAGAAGGCTCCACATAATGTCCAGGAGGACATGAGAAAACTGACCAGTTTTTTGGAACAACTAGAGATTAT
CAGTGAAGCTGAAAAGAAGCTAGATGCAAAAACTGGCAAAAACTGAGTCAGAAATCCCTGTTGTGATTTTGAAGATACCT
TCTCTTTGTGGAAGTTTCATCTAAAATTTTGTACTGTTGCCTTAGTCATATACTAGAATGATCAGATAGCCAGATTTGTG
ATTTTGCAGCTTGAAGATATATCCACAGCATTATAGTTTTGGTTGTACGACATTGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis