Browse Element(s) Details


OsAffx.23051.1.S1_x_at

Description gb:NM_183518.1
DB_XREF= gi:34894163
GEN=P0482C06.31
TID=OsAffx.23051.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0482C06.31 (P0482C06.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0200011/11EXS family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01950OsAffx.23050.1.S1_x_at11/111+509642..510304hypothetical protein
LOC_Os01g01960Os.6597.1.S1_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01960Os.6597.2.S1_x_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01970OsAffx.23086.1.S1_s_at11/111+521602..524804expressed protein
LOC_Os01g01970OsAffx.23086.1.S1_at8/111+521602..524804expressed protein
LOC_Os01g01970Os.22967.1.S1_s_at1/111+521602..524804expressed protein
LOC_Os01g01980OsAffx.23087.1.S1_at11/111+526169..526810hypothetical protein
LOC_Os01g01990OsAffx.10875.1.S1_at11/111+530588..530941expressed protein
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02010Os.56224.1.S1_at11/111+540227..541297expressed protein
LOC_Os01g02020Os.1637.1.S1_at10/111+545947..549427acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed
LOC_Os01g02040Os.11832.1.S1_at11/111+550827..554817transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g02050Os.49998.1.S1_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02050Os.33406.1.A1_x_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23051.1.S1_x_at--845--6991Chr01:538608..538632 (25 bp)
GTACGGATACTGCATCAACACCAAG
LOC_Os01g02000
OsAffx.23051.1.S1_x_at--177--3431Chr01:538638..538662 (25 bp)
CAGAGATTTGGCCTATGCAGTTTCC
LOC_Os01g02000
OsAffx.23051.1.S1_x_at--107--9831Chr01:538977..539001 (25 bp)
TAAACCTGGGCAAGTACGTCTCGGC
LOC_Os01g02000
OsAffx.23051.1.S1_x_at--454--951Chr01:539037..539061 (25 bp)
AGGACAGGAGCCTTGGATCACTCTC
LOC_Os01g02000
OsAffx.23051.1.S1_x_at--654--7171Chr01:539075..539099 (25 bp)
GTCTCCAGCTCTGCAACAATGTATC
LOC_Os01g02000
OsAffx.23051.1.S1_x_at--289--391Chr01:539097..539121 (25 bp)
ATCAGCTCTACTGGGACTTTGTCAA
LOC_Os01g02000
OsAffx.23051.1.S1_x_at--731--7071Chr01:539206..539524 (25 bp)
GTCAATGGGTCTGAACCTTGTGCTA
LOC_Os01g02000
OsAffx.23051.1.S1_x_at--563--8291Chr01:539526..539550 (25 bp)
GGCTTGCATGGCTACAAACCGTGAT
LOC_Os01g02000
OsAffx.23051.1.S1_x_at--812--2591Chr01:539542..539566 (25 bp)
AACCGTGATCCATCCAAACTTTGGG
LOC_Os01g02000
OsAffx.23051.1.S1_x_at--235--1071Chr01:539579..539603 (25 bp)
AGGGTCACTTCATTCTTTCTAGCTG
LOC_Os01g02000
OsAffx.23051.1.S1_x_at--711--3711Chr01:539597..539621 (25 bp)
CTAGCTGCTCTCGAGGTGATCCGGA
LOC_Os01g02000
Target Sequence 
GTACGGATACTGCATCAACACCAAGCATATCAGAGATTTGGCCTATGCAGTTTCCTTCCTGCCCTACTACTGGAGAGCCA
TGCAGTGTGCAAGACGGTGGTTCGATGAGAGCGACACGGGCCACCTGGTAAACCTGGGCAAGTACGTCTCGGCGATGCTC
GCCGCCGGCGCCAAAGTGGCCTACGAGAAGGACAGGAGCCTTGGATCACTCTCACTCCTCGTCATCGTCTCCAGCTCTGC
AACAATGTATCAGCTCTACTGGGACTTTGTCAAGGACTGGGGCTTGCTCCAGCCCAACTCCAAGAATCCATGGCTGAGGA
ATGACCTCATCCTTAAGAGCAAGTCCATATACTACTTGTCAATGGGTCTGAACCTTGTGCTAAGGCTTGCATGGCTACAA
ACCGTGATCCATCCAAACTTTGGGAGTTTGGACTCCAGGGTCACTTCATTCTTTCTAGCTGCTCTCGAGGTGATCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23051.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis