Browse Element(s) Details


Os.49998.1.S1_at

Description gb:AK100688.1
DB_XREF= gi:32985897
TID=Os.49998.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114C19, full insert sequence.
FL= gb:AK100688.1 gb:AK119573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0205011/11Phosphoenolpyruvate carboxylase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02010Os.56224.1.S1_at11/111+540227..541297expressed protein
LOC_Os01g02020Os.1637.1.S1_at10/111+545947..549427acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed
LOC_Os01g02040Os.11832.1.S1_at11/111+550827..554817transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g02050Os.49998.1.S1_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02050Os.33406.1.A1_x_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02060Os.12560.1.S1_s_at11/111+573291..576371Leucine Rich Repeat family protein, expressed
LOC_Os01g02070OsAffx.22936.1.S1_at9/111+582765..583247pectinesterase inhibitor domain containing protein
LOC_Os01g02080Os.35815.1.S1_at11/111+583225..584558peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g02090Os.1644.1.S1_at11/111+585671..590539expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49998.1.S1_at--805--9252Chr12:340450..340915 (25 bp)
TCCTCTCCTCTGCAAATTAACTTAT
NONE
Os.49998.1.S1_at--174--3151Chr01:559056..559080 (25 bp)
AATTAACTTATATTTCTTGCAACTA
LOC_Os01g02050
Os.49998.1.S1_at--535--10552Chr01:31525804..31525828 (25 bp)
TTCTTGCAACTATATTTCCGTCTGA
NONE
Os.49998.1.S1_at--486--5132Chr01:31525809..31525833 (25 bp)
GCAACTATATTTCCGTCTGAACTAA
NONE
Os.49998.1.S1_at--204--12Chr01:31525815..31526036 (25 bp)
ATATTTCCGTCTGAACTAATTACCG
NONE
Os.49998.1.S1_at--503--9191Chr01:559027..559051 (25 bp)
TCCGTCTGAACTAATTACCGGAGTT
LOC_Os01g02050
Os.49998.1.S1_at--284--2731Chr01:558973..558997 (25 bp)
AAGAAAGAAACCTTGCATGTAGCAT
LOC_Os01g02050
Os.49998.1.S1_at--920--5552Chr01:31525878..31525904 (25 bp)
GAAACCTTGCATGTAGCATTTTCAC
NONE
Os.49998.1.S1_at--975--6951Chr01:558955..558979 (25 bp)
GTAGCATTTTCACATTGGATTGGAT
LOC_Os01g02050
Os.49998.1.S1_at--362--31Chr01:558937..558961 (25 bp)
ATTGGATATGTACATTGCATGGAGA
LOC_Os01g02050
Os.49998.1.S1_at--749--5691Chr01:558896..558920 (25 bp)
GACTATAGTGGTGTGGATTGATGTA
LOC_Os01g02050
Target Sequence 
TCCTCTCCTCTGCAAATTAACTTATATTTCTTGCAACTATATTTCCGTCTGAACTAATTACCGGAGTTTTTTTTTCTCGT
TCAATTTTCCCTCAAAATAAGAAAGAAACCTTGCATGTAGCATTTTCACATTGGATTGGATATGTACATTGCATGGAGAA
TGAAATAGCATTATAGACTATAGTGGTGTGGATTGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis