Browse Element(s) Details


OsAffx.22936.1.S1_at

Description tigr:9629.m00117
TID=OsAffx.22936.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant invertasepectin methylesterase inhibitor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g020709/11pectinesterase inhibitor domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02050Os.49998.1.S1_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02050Os.33406.1.A1_x_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02060Os.12560.1.S1_s_at11/111+573291..576371Leucine Rich Repeat family protein, expressed
LOC_Os01g02070OsAffx.22936.1.S1_at9/111+582765..583247pectinesterase inhibitor domain containing protein
LOC_Os01g02080Os.35815.1.S1_at11/111+583225..584558peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g02090Os.1644.1.S1_at11/111+585671..590539expressed protein
LOC_Os01g02100Os.35391.2.S1_x_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02100Os.35391.1.S1_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02110Os.30617.1.S1_at11/111+600445..602445Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22936.1.S1_at--75--7211Chr01:582726..582750 (25 bp)
GTCGTCGTGCTGTCCATTTCGACCA
NONE
OsAffx.22936.1.S1_at--1128--7291Chr01:582732..582756 (25 bp)
GTGCTGTCCATTTCGACCATCGTCC
NONE
OsAffx.22936.1.S1_at--161--9031Chr01:582795..582819 (25 bp)
TGCAACAAAACCCACAACGCCAAGT
LOC_Os01g02070
OsAffx.22936.1.S1_at--339--2191Chr01:582799..582823 (25 bp)
ACAAAACCCACAACGCCAAGTGCGT
LOC_Os01g02070
OsAffx.22936.1.S1_at--589--2611Chr01:582810..582834 (25 bp)
AACGCCAAGTGCGTCGCCGTGCTCA
LOC_Os01g02070
OsAffx.22936.1.S1_at--175--7571Chr01:582925..582949 (25 bp)
GGGCCCTCATCAACGACAGGTCCAG
LOC_Os01g02070
OsAffx.22936.1.S1_at--468--4751Chr01:583107..583131 (25 bp)
GCTGACACGTGCGACGCGGCGTTCG
LOC_Os01g02070
OsAffx.22936.1.S1_at--1042--4191Chr01:583132..583156 (25 bp)
CCGCCGCCAAGGTGAGCTCGGTGAT
LOC_Os01g02070
OsAffx.22936.1.S1_at--147--5771Chr01:583161..583185 (25 bp)
GACGTCGACCAGAAGATGAAAGACA
LOC_Os01g02070
OsAffx.22936.1.S1_at--707--671Chr01:583176..583200 (25 bp)
ATGAAAGACAGATGCGGCGTCGCCC
LOC_Os01g02070
OsAffx.22936.1.S1_at--993--2131Chr01:583183..583207 (25 bp)
ACAGATGCGGCGTCGCCCGTGATCT
LOC_Os01g02070
Target Sequence 
GTCGTCGTGCTGTCCATTTCGACCATCGTCCCCGTGGCCATGGCCGACGCCGGCTTCATCGCCACCACCTGCAACAAAAC
CCACAACGCCAAGTGCGTCGCCGTGCTCACCGCCAACCCGGACAGCGCCGACGCCTCCACCGTCTCCGACCTCGCCGGCG
TCGCGCTCGACCTCGCCGTCGCCGCAGCCAGCGACGCCGGGGCCCTCATCAACGACAGGTCCAGCAGGTACGGCGGCGGC
GCGCCGGAGGGGGAAGCGCTGCGCGCCTGCAGCGGCGCCTACTTCGACGCCGCCAACGACCTCGACATCGACGCGCACGA
CAGCCTCGGCTCCGGCGACTACGCCGCCGCGTCGCGCCTGGTGTCCGGGGCGAGTGGCGCCGCTGACACGTGCGACGCGG
CGTTCGCCGCCGCCAAGGTGAGCTCGGTGATGGTCGACGTCGACCAGAAGATGAAAGACAGATGCGGCGTCGCCCGTGAT
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis