Browse Element(s) Details


Os.1644.1.S1_at

Description gb:AK102802.1
DB_XREF= gi:32988011
TID=Os.1644.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.1644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439B06.16 (P0439B06.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108G08, full insert sequence.
FL= gb:AK102802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0209011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02050Os.49998.1.S1_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02050Os.33406.1.A1_x_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02060Os.12560.1.S1_s_at11/111+573291..576371Leucine Rich Repeat family protein, expressed
LOC_Os01g02070OsAffx.22936.1.S1_at9/111+582765..583247pectinesterase inhibitor domain containing protein
LOC_Os01g02080Os.35815.1.S1_at11/111+583225..584558peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g02090Os.1644.1.S1_at11/111+585671..590539expressed protein
LOC_Os01g02100Os.35391.2.S1_x_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02100Os.35391.1.S1_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02110Os.30617.1.S1_at11/111+600445..602445Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g02120Os.29115.1.S1_at11/111+609366..612433MOTHER of FT and TF1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1644.1.S1_at--381--8611Chr01:589923..589947 (25 bp)
TGGTGATTTCCCAAGGCATCGCCAG
LOC_Os01g02090
Os.1644.1.S1_at--643--751Chr01:590106..590130 (25 bp)
ATGTACTGTCAGTCATACCGGCTGG
LOC_Os01g02090
Os.1644.1.S1_at--569--7311Chr01:590130..590154 (25 bp)
GTGCTGTATCCTTCACCATGATGCA
LOC_Os01g02090
Os.1644.1.S1_at--88--5091Chr01:590152..590176 (25 bp)
GCACCAGCTCTTACTGTTGTCCAAA
LOC_Os01g02090
Os.1644.1.S1_at--945--9831Chr01:590177..590201 (25 bp)
TAAATGGAACTTAGCGTGCCCCTTG
LOC_Os01g02090
Os.1644.1.S1_at--507--8851Chr01:590225..590249 (25 bp)
TGATGTCCGGTGGTTTATACCCCTA
LOC_Os01g02090
Os.1644.1.S1_at--1018--7871Chr01:590236..590260 (25 bp)
GGTTTATACCCCTAGAGTTGTCAGT
LOC_Os01g02090
Os.1644.1.S1_at--676--7591Chr01:590267..590291 (25 bp)
GGGCAGCTGATGCTCTATCATCATA
LOC_Os01g02090
Os.1644.1.S1_at--587--2311Chr01:590304..590328 (25 bp)
AAAGTGTGCCTCTTACTCTTTAGGG
LOC_Os01g02090
Os.1644.1.S1_at--556--10131Chr01:590357..590381 (25 bp)
TATAGGCGGATCTCATTCCTGGTAC
LOC_Os01g02090
Os.1644.1.S1_at--910--611Chr01:590385..590409 (25 bp)
ATGCTGGGCTTAACTCACTCGGTGA
LOC_Os01g02090
Target Sequence 
TGGTGATTTCCCAAGGCATCGCCAGCCCTATCGTGGTGGGGGGCGTGGTTACCGTGGCGGCGGTCGCGCCCGTGGGTCAT
ACTACGGTGGCAGAGGGTATGGAAGCATGGGAGCAAGGGGTGGGCAGGGTAATTCTTACCCTCACCGTGGTTCCTACTGA
AGGGGCTGATGATGATAGCAGATATGTACTGTCAGTCATACCGGCTGGTGCTGTATCCTTCACCATGATGCACCAGCTCT
TACTGTTGTCCAAATAAATGGAACTTAGCGTGCCCCTTGTGTTGGCAGGGGCCGTATAGGTTTGATGTCCGGTGGTTTAT
ACCCCTAGAGTTGTCAGTAGATGGGGGCAGCTGATGCTCTATCATCATATATAGTAGGTGCAAAGTGTGCCTCTTACTCT
TTAGGGTGTTACCATGCGAGTGGGATTTAGTTTGTATAGGCGGATCTCATTCCTGGTACACCATGCTGGGCTTAACTCAC
TCGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis