Browse Element(s) Details


Os.29115.1.S1_at

Description gb:AK110620.1
DB_XREF= gi:32995829
TID=Os.29115.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative E12A11 protein (P0439B06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-A04, full insert sequence.
FL= gb:AK110620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0212011/11MOTHER of FT and TF1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02080Os.35815.1.S1_at11/111+583225..584558peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g02090Os.1644.1.S1_at11/111+585671..590539expressed protein
LOC_Os01g02100Os.35391.2.S1_x_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02100Os.35391.1.S1_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02110Os.30617.1.S1_at11/111+600445..602445Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g02120Os.29115.1.S1_at11/111+609366..612433MOTHER of FT and TF1 protein, putative, expressed
LOC_Os01g02130Os.30376.1.S1_at11/111+617374..618318expressed protein
LOC_Os01g02140NANA1+620870..621289expressed protein
LOC_Os01g02150Os.1653.1.S1_at11/111+622788..623811expressed protein
LOC_Os01g02160OsAffx.350.1.S1_s_at11/111+628895..629715expressed protein
LOC_Os01g02170Os.33335.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_x_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53712.1.S1_x_at1/111+630813..636111expressed protein
LOC_Os01g02180Os.37685.1.A1_at11/111+637399..641069expressed protein
LOC_Os01g02180Os.5620.2.S1_s_at10/111+637399..641069expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29115.1.S1_at--596--9851Chr01:611894..611918 (25 bp)
TACACAGGTACGTGCTGGTGCTGTA
LOC_Os01g02120
Os.29115.1.S1_at--582--8751Chr01:611915..611939 (25 bp)
TGTACGAGCAGAAGGCGCGCTTCGT
LOC_Os01g02120
Os.29115.1.S1_at--508--5651Chr01:611965..611989 (25 bp)
GACAGGCCCAACTTCAACACAAGAG
LOC_Os01g02120
Os.29115.1.S1_at--564--2471Chr01:611980..612004 (25 bp)
AACACAAGAGCATTCGCGGCGTACC
LOC_Os01g02120
Os.29115.1.S1_at--710--2751Chr01:612115..612139 (25 bp)
AAGAAAGCAAGCACGCCTGCGGATG
LOC_Os01g02120
Os.29115.1.S1_at--234--4471Chr01:612146..612170 (25 bp)
GCCGGCCCTACTATATTATTACAAT
LOC_Os01g02120
Os.29115.1.S1_at--1046--4851Chr01:612193..612217 (25 bp)
GCTAGCTAGCTCTCAACTCAAGTAT
LOC_Os01g02120
Os.29115.1.S1_at--642--6891Chr01:612214..612238 (25 bp)
GTATACTTACTGGAACTCGACTGCG
LOC_Os01g02120
Os.29115.1.S1_at--1150--4971Chr01:612247..612271 (25 bp)
GCATGTCCTCATCATACGTACGAAC
LOC_Os01g02120
Os.29115.1.S1_at--231--7311Chr01:612272..612296 (25 bp)
GTGCGTGTCCACGTACTGTGTACTA
LOC_Os01g02120
Os.29115.1.S1_at--607--10011Chr01:612295..612319 (25 bp)
TAGCTAGCGAGTACTCTCTCCATAT
LOC_Os01g02120
Target Sequence 
TACACAGGTACGTGCTGGTGCTGTACGAGCAGAAGGCGCGCTTCGTGGACGGCGCGCTGATGCCGCCGGCGGACAGGCCC
AACTTCAACACAAGAGCATTCGCGGCGTACCATCAGCTCGGCCTCCCCACCGCCGTCGTCCACTTCAACTCCCAGAGGGA
GCCCGCCAACCGCCGCCGCTAATAGTAATAGCCTACTATCTCTATCTATCTATCCATAATGAAGAAAGCAAGCACGCCTG
CGGATGCGGCCGGCCGGCCCTACTATATTATTACAATAATATAGTTTTTGAATAATTAAGCTAGCTAGCTCTCAACTCAA
GTATACTTACTGGAACTCGACTGCGTTGCGTACGCATGTCCTCATCATACGTACGAACGTGCGTGTCCACGTACTGTGTA
CTAGCTAGCGAGTACTCTCTCCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis