Browse Element(s) Details


Os.37685.1.A1_at

Description gb:AU172470
DB_XREF= gi:12622257
DB_XREF=AU172470
CLONE=E1261
TID=Os.37685.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.37685 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0218011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02120Os.29115.1.S1_at11/111+609366..612433MOTHER of FT and TF1 protein, putative, expressed
LOC_Os01g02130Os.30376.1.S1_at11/111+617374..618318expressed protein
LOC_Os01g02140NANA1+620870..621289expressed protein
LOC_Os01g02150Os.1653.1.S1_at11/111+622788..623811expressed protein
LOC_Os01g02160OsAffx.350.1.S1_s_at11/111+628895..629715expressed protein
LOC_Os01g02170Os.33335.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_x_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53712.1.S1_x_at1/111+630813..636111expressed protein
LOC_Os01g02180Os.37685.1.A1_at11/111+637399..641069expressed protein
LOC_Os01g02180Os.5620.2.S1_s_at10/111+637399..641069expressed protein
LOC_Os01g02190Os.31744.1.S1_at10/111+642417..643524Major intrinsic protein, expressed
LOC_Os01g02200Os.1660.1.S1_at11/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g02200Os.54720.1.S1_at1/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g02210NANA1+659085..661374retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02220NANA1+661579..664356retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02230NANA1+664849..667778retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37685.1.A1_at--126--1351Chr01:637547..637571 (25 bp)
AGAGAGGAAAACATGTGCTCCTATC
LOC_Os01g02180
Os.37685.1.A1_at--1086--6011Chr01:637546..637570 (25 bp)
GAGAGGAAAACATGTGCTCCTATCT
LOC_Os01g02180
Os.37685.1.A1_at--197--1331Chr01:637545..637569 (25 bp)
AGAGGAAAACATGTGCTCCTATCTA
LOC_Os01g02180
Os.37685.1.A1_at--542--6191Chr01:637544..637568 (25 bp)
GAGGAAAACATGTGCTCCTATCTAT
LOC_Os01g02180
Os.37685.1.A1_at--625--6271Chr01:637460..637484 (25 bp)
GATGTCGTGATTTTTAACTTGAAGT
LOC_Os01g02180
Os.37685.1.A1_at--50--7211Chr01:637457..637481 (25 bp)
GTCGTGATTTTTAACTTGAAGTGCC
LOC_Os01g02180
Os.37685.1.A1_at--1144--9411Chr01:637456..637480 (25 bp)
TCGTGATTTTTAACTTGAAGTGCCA
LOC_Os01g02180
Os.37685.1.A1_at--481--3971Chr01:637455..637479 (25 bp)
CGTGATTTTTAACTTGAAGTGCCAA
LOC_Os01g02180
Os.37685.1.A1_at--155--7411Chr01:637454..637478 (25 bp)
GTGATTTTTAACTTGAAGTGCCAAG
LOC_Os01g02180
Os.37685.1.A1_at--309--10491Chr01:637442..637466 (25 bp)
TTGAAGTGCCAAGATTACTAGTACT
LOC_Os01g02180
Os.37685.1.A1_at--301--8931Chr01:637441..637465 (25 bp)
TGAAGTGCCAAGATTACTAGTACTT
LOC_Os01g02180
Target Sequence 
AGAGAGGAAAACATGTGCTCCTATCTATCTATCTATCTATCTATCTATAGCTATGAATGCATCATCCAGGGCAACACCTT
GGTCTTTGATGTCGTGATTTTTAACTTGAAGTGCCAAGATTACTAGTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37685.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis