Browse Element(s) Details


Os.1660.1.S1_at

Description gb:AK120201.1
DB_XREF= gi:37989824
TID=Os.1660.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439B06.32 (P0439B06.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037I12, full insert sequence.
FL= gb:AK058409.1 gb:AK120201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0220011/11armadillo/beta-catenin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02140NANA1+620870..621289expressed protein
LOC_Os01g02150Os.1653.1.S1_at11/111+622788..623811expressed protein
LOC_Os01g02160OsAffx.350.1.S1_s_at11/111+628895..629715expressed protein
LOC_Os01g02170Os.33335.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_x_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53712.1.S1_x_at1/111+630813..636111expressed protein
LOC_Os01g02180Os.37685.1.A1_at11/111+637399..641069expressed protein
LOC_Os01g02180Os.5620.2.S1_s_at10/111+637399..641069expressed protein
LOC_Os01g02190Os.31744.1.S1_at10/111+642417..643524Major intrinsic protein, expressed
LOC_Os01g02200Os.1660.1.S1_at11/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g02200Os.54720.1.S1_at1/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g02210NANA1+659085..661374retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02220NANA1+661579..664356retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02230NANA1+664849..667778retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1660.1.S1_at--890--731Chr01:645511..645535 (25 bp)
ATGTTCTTCTTGACTTGCTGCGCAA
LOC_Os01g02200
Os.1660.1.S1_at--1040--9131Chr01:645493..645517 (25 bp)
TGCGCAACTCGCCATATTCAAGATC
LOC_Os01g02200
Os.1660.1.S1_at--794--10211Chr01:645479..645503 (25 bp)
TATTCAAGATCAAAGCTGCCGGCAG
LOC_Os01g02200
Os.1660.1.S1_at--933--4251Chr01:645461..645485 (25 bp)
CCGGCAGACACACTCGAGAACATTG
LOC_Os01g02200
Os.1660.1.S1_at--331--10771Chr01:645341..645365 (25 bp)
TTGAGGCATTTGCAGCGTCGAGCTT
LOC_Os01g02200
Os.1660.1.S1_at--578--9191Chr01:645236..645260 (25 bp)
TCCAGGCCTTGACAGGACCGAGTGA
LOC_Os01g02200
Os.1660.1.S1_at--574--1791Chr01:645220..645244 (25 bp)
ACCGAGTGACTGGTTTGAGCGCTCA
LOC_Os01g02200
Os.1660.1.S1_at--1079--5871Chr01:645204..645228 (25 bp)
GAGCGCTCATATACTTAAGCTGTTG
LOC_Os01g02200
Os.1660.1.S1_at--547--8991Chr01:645181..645205 (25 bp)
TGAAGTAGTAGTTCCTTTTCCATTT
LOC_Os01g02200
Os.1660.1.S1_at--242--10391Chr01:645126..645150 (25 bp)
TTTTCTTCTGTTTCTCATGTGCCCT
LOC_Os01g02200
Os.1660.1.S1_at--1155--5091Chr01:645097..645121 (25 bp)
GCACTTTGTGCATGAAAGACCCCAA
LOC_Os01g02200
Target Sequence 
ATGTTCTTCTTGACTTGCTGCGCAACTCGCCATATTCAAGATCAAAGCTGCCGGCAGACACACTCGAGAACATTGTAAGC
AACATTGCTTCACAGATAGATGGCGAGGACCGCGGTGGGAAAGCTAAGAAGATGCTTGCTGAGATGGTGAAGGTTAGCAT
GGAGCAAAGCTTGAGGCATTTGCAGCGTCGAGCTTCTTTTGCATGATCAGGTGATTGGCACATTTTGCAATGGAAGTAGA
CATAGTGGAAATAATGAGTTTGCTGGTGATGCCGGTCCAGGCCTTGACAGGACCGAGTGACTGGTTTGAGCGCTCATATA
CTTAAGCTGTTGAAGTAGTAGTTCCTTTTCCATTTCAATCTTGTGTGTTCTGAACAAGAACATTTTTTTCTTCTGTTTCT
CATGTGCCCTTCCTGCACTTTGTGCATGAAAGACCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis