Browse Element(s) Details


Os.53043.1.S1_x_at

Description gb:AK070580.1
DB_XREF= gi:32980604
TID=Os.53043.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061N16, full insert sequence.
FL= gb:AK070580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0217011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02120Os.29115.1.S1_at11/111+609366..612433MOTHER of FT and TF1 protein, putative, expressed
LOC_Os01g02130Os.30376.1.S1_at11/111+617374..618318expressed protein
LOC_Os01g02140NANA1+620870..621289expressed protein
LOC_Os01g02150Os.1653.1.S1_at11/111+622788..623811expressed protein
LOC_Os01g02160OsAffx.350.1.S1_s_at11/111+628895..629715expressed protein
LOC_Os01g02170Os.33335.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_x_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53712.1.S1_x_at1/111+630813..636111expressed protein
LOC_Os01g02180Os.37685.1.A1_at11/111+637399..641069expressed protein
LOC_Os01g02180Os.5620.2.S1_s_at10/111+637399..641069expressed protein
LOC_Os01g02190Os.31744.1.S1_at10/111+642417..643524Major intrinsic protein, expressed
LOC_Os01g02200Os.1660.1.S1_at11/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g02200Os.54720.1.S1_at1/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g02210NANA1+659085..661374retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53043.1.S1_x_at--1074--791Chr01:635032..635056 (25 bp)
ATGGGATACGATGGGTTCACCTCAC
LOC_Os01g02170
Os.53043.1.S1_x_at--424--4951Chr01:634994..635018 (25 bp)
GCATTACCTGTTTGCGTCTGAGAAT
LOC_Os01g02170
Os.53043.1.S1_x_at--1120--5271Chr01:634973..634997 (25 bp)
GAATGTGGACTCTGTGGTCTTCGGC
LOC_Os01g02170
Os.53043.1.S1_x_at--780--911Chr01:634912..634936 (25 bp)
AGGCTGATGAAGTACCTCACCAAGT
LOC_Os01g02170
Os.53043.1.S1_x_at--1020--3091Chr01:634878..634902 (25 bp)
AATACCAGAGGTTCCCAGAGGCGCA
LOC_Os01g02170
Os.53043.1.S1_x_at--429--4731Chr01:634817..634841 (25 bp)
GCTGTGTGACATTGTGCCCTCATTT
LOC_Os01g02170
Os.53043.1.S1_x_at--487--6611Chr01:634770..634794 (25 bp)
GATTGGTGTTTGACCAGCACTTCTC
LOC_Os01g02170
Os.53043.1.S1_x_at--484--2691Chr01:634671..634695 (25 bp)
AAGCTGAATCTGCAGGGCCTATCCT
LOC_Os01g02170
Os.53043.1.S1_x_at--943--9271Chr01:634650..634674 (25 bp)
TCCTGGACTTGCTTCGACGTATGCA
LOC_Os01g02170
Os.53043.1.S1_x_at--82--5631Chr01:634612..634636 (25 bp)
GACACTAAAATGTGCCCCTCAATTT
LOC_Os01g02170
Os.53043.1.S1_x_at--379--10451Chr01:634575..634599 (25 bp)
TTAGCTGTTATGCTCATGTCCGAGA
LOC_Os01g02170
Target Sequence 
ATGGGATACGATGGGTTCACCTCACCGGAGGTGTGCCTGCATTACCTGTTTGCGTCTGAGAATGTGGACTCTGTGGTCTT
CGGCGCAGCCGTATCGGAGCTGGATGGTGGGGAGGTGGTCAGGCTGATGAAGTACCTCACCAAGTGGATAGGGAAATACC
AGAGGTTCCCAGAGGCGCAGGCATGCCCAGAGGCTGTGGGAATGCCAGGGCTGGAGCTGTGTGACATTGTGCCCTCATTT
CGGGTGGTGGCTGGGGCGCTAGGATTGGTGTTTGACCAGCACTTCTCGCACCTAGCGCTGAATGCAGAGTTGAAGGAGGA
TTTGAAGGCCGCGGAGATGATGGTGAAACAGCTGGCCACAGAAGCTGAATCTGCAGGGCCTATCCTGGACTTGCTTCGAC
GTATGCAGCAAGATGTGTGAGACACTAAAATGTGCCCCTCAATTTTTTTTACTGATCTTAGCTGTTATGCTCATGTCCGA
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53043.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis