Browse Element(s) Details


Os.31744.1.S1_at

Description gb:AK106825.1
DB_XREF= gi:32992034
TID=Os.31744.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31744 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pollen-specific membrane integral protein (P0439B06.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-E11, full insert sequence.
FL= gb:AK106825.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0219010/11Major intrinsic protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02130Os.30376.1.S1_at11/111+617374..618318expressed protein
LOC_Os01g02140NANA1+620870..621289expressed protein
LOC_Os01g02150Os.1653.1.S1_at11/111+622788..623811expressed protein
LOC_Os01g02160OsAffx.350.1.S1_s_at11/111+628895..629715expressed protein
LOC_Os01g02170Os.33335.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_x_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53712.1.S1_x_at1/111+630813..636111expressed protein
LOC_Os01g02180Os.37685.1.A1_at11/111+637399..641069expressed protein
LOC_Os01g02180Os.5620.2.S1_s_at10/111+637399..641069expressed protein
LOC_Os01g02190Os.31744.1.S1_at10/111+642417..643524Major intrinsic protein, expressed
LOC_Os01g02200Os.1660.1.S1_at11/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g02200Os.54720.1.S1_at1/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g02210NANA1+659085..661374retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02220NANA1+661579..664356retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02230NANA1+664849..667778retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31744.1.S1_at--239--10671Chr01:642551..642575 (25 bp)
TTCCTCTGCGGCACCTCTGTTGGGA
LOC_Os01g02190
Os.31744.1.S1_at--433--8251Chr01:642542..642566 (25 bp)
GGCACCTCTGTTGGGATCGCCGGCT
LOC_Os01g02190
Os.31744.1.S1_at--587--9991Chr01:642512..642536 (25 bp)
TAGCTACCACACTAGAGCTTAGCCC
LOC_Os01g02190
Os.31744.1.S1_at--1133--1551Chr01:642497..642521 (25 bp)
AGCTTAGCCCTCCATATATATATCC
LOC_Os01g02190
Os.31744.1.S1_at--673--251Chr01:642478..642502 (25 bp)
ATATCCACAGAATAATTCGCCTCCA
LOC_Os01g02190
Os.31744.1.S1_at--887--91Chr01:642464..642488 (25 bp)
ATTCGCCTCCATTATGATAGCTGCA
LOC_Os01g02190
Os.31744.1.S1_at--582--10111Chr01:642452..642476 (25 bp)
TATGATAGCTGCATGAACACGACGA
LOC_Os01g02190
Os.31744.1.S1_at--594--671Chr01:642440..642464 (25 bp)
ATGAACACGACGAGCATCGCTGCAC
LOC_Os01g02190
Os.31744.1.S1_at--975--4971Chr01:642427..642451 (25 bp)
GCATCGCTGCACTGAAATTGTTTTG
LOC_Os01g02190
Os.31744.1.S1_at--551--5051Chr01:642419..642443 (25 bp)
GCACTGAAATTGTTTTGGACCAACC
LOC_Os01g02190
Os.31744.1.S1_at--1061--5831Chr01:642402..642426 (25 bp)
GACCAACCAATAGAGATTTTCCATC
NONE
Target Sequence 
TTCCTCTGCGGCACCTCTGTTGGGATCGCCGGCTCGCCCTAGCTACCACACTAGAGCTTAGCCCTCCATATATATATCCA
CAGAATAATTCGCCTCCATTATGATAGCTGCATGAACACGACGAGCATCGCTGCACTGAAATTGTTTTGGACCAACCAAT
AGAGATTTTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis