Browse Element(s) Details


OsAffx.23051.2.S1_at

Description tigr:9629.m00107
TID=OsAffx.23051.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At1g68740F24J5.8
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0200011/11EXS family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01950OsAffx.23050.1.S1_x_at11/111+509642..510304hypothetical protein
LOC_Os01g01960Os.6597.1.S1_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01960Os.6597.2.S1_x_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01970OsAffx.23086.1.S1_s_at11/111+521602..524804expressed protein
LOC_Os01g01970OsAffx.23086.1.S1_at8/111+521602..524804expressed protein
LOC_Os01g01970Os.22967.1.S1_s_at1/111+521602..524804expressed protein
LOC_Os01g01980OsAffx.23087.1.S1_at11/111+526169..526810hypothetical protein
LOC_Os01g01990OsAffx.10875.1.S1_at11/111+530588..530941expressed protein
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02010Os.56224.1.S1_at11/111+540227..541297expressed protein
LOC_Os01g02020Os.1637.1.S1_at10/111+545947..549427acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed
LOC_Os01g02040Os.11832.1.S1_at11/111+550827..554817transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g02050Os.49998.1.S1_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02050Os.33406.1.A1_x_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23051.2.S1_at--1089--3131Chr01:539809..540043 (25 bp)
AATTCAGGGCGGGTTCAGCCTTCAG
LOC_Os01g02000
OsAffx.23051.2.S1_at--372--131Chr01:539810..540044 (25 bp)
ATTCAGGGCGGGTTCAGCCTTCAGG
LOC_Os01g02000
OsAffx.23051.2.S1_at--123--3991Chr01:540029..540052 (24 bp)
CGGGTTCAGCCTTCAGGGAATGGCA
LOC_Os01g02000
OsAffx.23051.2.S1_at--589--6751Chr01:540031..540055 (25 bp)
GTTCAGCCTTCAGGGAATGGCAATT
LOC_Os01g02000
OsAffx.23051.2.S1_at--433--4311Chr01:540037..540061 (25 bp)
CCTTCAGGGAATGGCAATTGTATGC
LOC_Os01g02000
OsAffx.23051.2.S1_at--1106--1051Chr01:540042..540066 (25 bp)
AGGGAATGGCAATTGTATGCAACTG
LOC_Os01g02000
OsAffx.23051.2.S1_at--297--1411Chr01:540068..540092 (25 bp)
AGACAGTGATCCGTTCCTAGATGCA
LOC_Os01g02000
OsAffx.23051.2.S1_at--909--5651Chr01:540069..540093 (25 bp)
GACAGTGATCCGTTCCTAGATGCAT
LOC_Os01g02000
OsAffx.23051.2.S1_at--41--3471Chr01:540071..540095 (25 bp)
CAGTGATCCGTTCCTAGATGCATTA
LOC_Os01g02000
OsAffx.23051.2.S1_at--1087--7391Chr01:540073..540097 (25 bp)
GTGATCCGTTCCTAGATGCATTAAC
LOC_Os01g02000
OsAffx.23051.2.S1_at--794--8851Chr01:540074..540098 (25 bp)
TGATCCGTTCCTAGATGCATTAACA
LOC_Os01g02000
Target Sequence 
AATTCAGGGCGGGTTCAGCCTTCAGGGAATGGCAATTGTATGCAACTGAAGACAGTGATCCGTTCCTAGATGCATTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23051.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis