Browse Element(s) Details


OsAffx.23087.1.S1_at

Description tigr:9629.m00105
TID=OsAffx.23087.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0198011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01920OsAffx.23048.1.S1_x_at11/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.23696.1.S1_x_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.20956.1.S1_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01930NANA1+506189..506914hypothetical protein
LOC_Os01g01940Os.37423.1.S1_at11/111+507554..508944expressed protein
LOC_Os01g01950OsAffx.23050.1.S1_x_at11/111+509642..510304hypothetical protein
LOC_Os01g01960Os.6597.1.S1_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01960Os.6597.2.S1_x_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01970OsAffx.23086.1.S1_s_at11/111+521602..524804expressed protein
LOC_Os01g01970OsAffx.23086.1.S1_at8/111+521602..524804expressed protein
LOC_Os01g01970Os.22967.1.S1_s_at1/111+521602..524804expressed protein
LOC_Os01g01980OsAffx.23087.1.S1_at11/111+526169..526810hypothetical protein
LOC_Os01g01990OsAffx.10875.1.S1_at11/111+530588..530941expressed protein
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02010Os.56224.1.S1_at11/111+540227..541297expressed protein
LOC_Os01g02020Os.1637.1.S1_at10/111+545947..549427acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed
LOC_Os01g02040Os.11832.1.S1_at11/111+550827..554817transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23087.1.S1_at--391--4511Chr01:526694..526718 (25 bp)
GCCGACGAGGGAGGACTACTATACG
LOC_Os01g01980
OsAffx.23087.1.S1_at--1076--2031Chr01:526677..526701 (25 bp)
ACTATACGGCGGAAGAGATCATCTC
LOC_Os01g01980
OsAffx.23087.1.S1_at--677--8271Chr01:526648..526672 (25 bp)
GGCATCAGCGACATGCAGATCTGTC
LOC_Os01g01980
OsAffx.23087.1.S1_at--1042--1271Chr01:526632..526656 (25 bp)
AGATCTGTCGCGTCCACAAAGCCAT
LOC_Os01g01980
OsAffx.23087.1.S1_at--150--2371Chr01:526615..526639 (25 bp)
AAAGCCATCGTGATGGGCTCCGCGC
LOC_Os01g01980
OsAffx.23087.1.S1_at--266--9071Chr01:526506..526530 (25 bp)
TGCTTCCGCCGCTTGAACAAACGAT
LOC_Os01g01980
OsAffx.23087.1.S1_at--341--8191Chr01:526397..526421 (25 bp)
GGAAGCTCTGGAAAGCTCCTTCTAC
LOC_Os01g01980
OsAffx.23087.1.S1_at--306--3011Chr01:526366..526390 (25 bp)
AATGACGCGATTTCTCTCATCTTCA
LOC_Os01g01980
OsAffx.23087.1.S1_at--1147--5551Chr01:526304..526328 (25 bp)
GAAAGCTCGCAGCAGCATCGCTCTA
LOC_Os01g01980
OsAffx.23087.1.S1_at--734--991Chr01:526228..526252 (25 bp)
AGGATAGCACCACCACTTACTACTA
LOC_Os01g01980
OsAffx.23087.1.S1_at--1031--9891Chr01:526205..526229 (25 bp)
TACTACTCCCGCCAATAATATTGCC
LOC_Os01g01980
Target Sequence 
GCCGACGAGGGAGGACTACTATACGGCGGAAGAGATCATCTCGCACGGCATCAGCGACATGCAGATCTGTCGCGTCCACA
AAGCCATCGTGATGGGCTCCGCGCCGCTCTACGACGCCAAAACCATGGGCGCCATCTTGCCGCCGCCGTCCTGCCCTCTC
ACCACCGACCTCGCCGAGCGCCTCGCCCTGCTTCCGCCGCTTGAACAAACGATCTCCTACCCCGACTGCGACGACGTCGG
CCTGGAAGGCTTCGCCATGCGCGTCCAGCACGCGGTGACCGCGCTCGGCTTCGCCGAGGAAGCTCTGGAAAGCTCCTTCT
ACACCTTCAATGACGCGATTTCTCTCATCTTCACCAAGCCGATTCCGCCGCTGGCCCACTCCACCAAGAGGAAAGCTCGC
AGCAGCATCGCTCTAGCGCTCCGCTGCGCCGCCTACGCCCATGCTCAGGCCACCATCGCCCTCACCAGGATAGCACCACC
ACTTACTACTACTACTCCCGCCAATAATATTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis