Browse Element(s) Details


OsAffx.23048.1.S1_x_at

Description tigr:9629.m00098
TID=OsAffx.23048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HD domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0192011/11metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01860NANA1+469876..473112transposon protein, putative, unclassified
LOC_Os01g01870Os.30044.1.S1_a_at11/111+475180..477967Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01880Os.57330.1.S1_at11/111+479134..479757expressed protein
LOC_Os01g01890Os.9464.1.A1_at11/111+480689..483294expressed protein
LOC_Os01g01900NANA1+484887..489754retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01910OsAffx.23045.1.S1_at11/111+492868..494170hypothetical protein
LOC_Os01g01910OsAffx.1830.1.S1_at3/111+492868..494170hypothetical protein
LOC_Os01g01920OsAffx.23048.1.S1_x_at11/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.23696.1.S1_x_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.20956.1.S1_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01930NANA1+506189..506914hypothetical protein
LOC_Os01g01940Os.37423.1.S1_at11/111+507554..508944expressed protein
LOC_Os01g01950OsAffx.23050.1.S1_x_at11/111+509642..510304hypothetical protein
LOC_Os01g01960Os.6597.1.S1_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01960Os.6597.2.S1_x_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01970OsAffx.23086.1.S1_s_at11/111+521602..524804expressed protein
LOC_Os01g01970OsAffx.23086.1.S1_at8/111+521602..524804expressed protein
LOC_Os01g01970Os.22967.1.S1_s_at1/111+521602..524804expressed protein
LOC_Os01g01980OsAffx.23087.1.S1_at11/111+526169..526810hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23048.1.S1_x_at--282--4951Chr01:502382..502406 (25 bp)
GAATTGTCCGGGTCTACGCCAAGAA
LOC_Os01g01920
OsAffx.23048.1.S1_x_at--1069--5411Chr01:502522..502546 (25 bp)
GAAGCCTTCGAGAACCTACAACTGA
LOC_Os01g01920
OsAffx.23048.1.S1_x_at--1002--2011Chr01:502607..502631 (25 bp)
ACTAATCTTCAGCAACTCCTTGTTG
LOC_Os01g01920
OsAffx.23048.1.S1_x_at--1146--3611Chr01:502625..502649 (25 bp)
CTTGTTGCCAAGTACTGTCATCAGT
LOC_Os01g01920
OsAffx.23048.1.S1_x_at--679--5431Chr01:502728..502752 (25 bp)
GAACCTTTTATTACTGAGCGGGAGC
LOC_Os01g01920
OsAffx.23048.1.S1_x_at--569--4671Chr01:502745..502769 (25 bp)
GCGGGAGCATCCAATACTACTAATT
LOC_Os01g01920
OsAffx.23048.1.S1_x_at--873--6811Chr01:502779..502803 (25 bp)
GTTTTTGCTGGTAATCTGCACGCAT
LOC_Os01g01920
OsAffx.23048.1.S1_x_at--956--7091Chr01:502867..502891 (25 bp)
GTCACATGACGGCTGGCTACCATAG
LOC_Os01g01920
OsAffx.23048.1.S1_x_at--478--6471Chr01:502907..502931 (25 bp)
GATACGCCAGTATCGTGATCTTCTG
LOC_Os01g01920
OsAffx.23048.1.S1_x_at--673--3871Chr01:502957..502981 (25 bp)
CTGTCTGGGACTGATGGCGTTGCTC
LOC_Os01g01920
OsAffx.23048.1.S1_x_at--923--4032Chr01:502974..502998 (25 bp)
CGTTGCTCCTGCTTTGCTAGTGAAT
LOC_Os01g01920
Target Sequence 
GAATTGTCCGGGTCTACGCCAAGAAGCACGAGCTGGTTGAAGCGGTGTCAGAAGCCTTCGAGAACCTACAACTGAGGATG
TATGGTGAGAAGACACAAGTTCATGACACTCCCAGGAAGAAGCGCATTAGATTCCACTAATCTTCAGCAACTCCTTGTTG
CCAAGTACTGTCATCAGTGTTAGTTAGTAGTAGCTCGTAGCATACTAGTACGACAAAGGAGAAAGGATCATAGGTAGACA
TACGGAAGGAAGGAAGGAACCTTTTATTACTGAGCGGGAGCATCCAATACTACTAATTACGGGTTTTGTTTTTGCTGGTA
ATCTGCACGCATAAGTAACGCGCAGATTAGTTGTACAGGTGATAGGCCACAGAAAATGTCTTGGGCAGTGGTGGTGTCAC
ATGACGGCTGGCTACCATAGCAGATAGTAGTAGCTGATACGCCAGTATCGTGATCTTCTGATTTTTTTTTTACTCTGAGC
CTGGGCTGTCTGGGACTGATGGCGTTGCTCCTGCTTTGCTAGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23048.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis