Browse Element(s) Details


OsAffx.23086.1.S1_at

Description tigr:9629.m00104
TID=OsAffx.23086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g019708/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01920OsAffx.23048.1.S1_x_at11/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.23696.1.S1_x_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.20956.1.S1_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01930NANA1+506189..506914hypothetical protein
LOC_Os01g01940Os.37423.1.S1_at11/111+507554..508944expressed protein
LOC_Os01g01950OsAffx.23050.1.S1_x_at11/111+509642..510304hypothetical protein
LOC_Os01g01960Os.6597.1.S1_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01960Os.6597.2.S1_x_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01970OsAffx.23086.1.S1_s_at11/111+521602..524804expressed protein
LOC_Os01g01970OsAffx.23086.1.S1_at8/111+521602..524804expressed protein
LOC_Os01g01970Os.22967.1.S1_s_at1/111+521602..524804expressed protein
LOC_Os01g01980OsAffx.23087.1.S1_at11/111+526169..526810hypothetical protein
LOC_Os01g01990OsAffx.10875.1.S1_at11/111+530588..530941expressed protein
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02010Os.56224.1.S1_at11/111+540227..541297expressed protein
LOC_Os01g02020Os.1637.1.S1_at10/111+545947..549427acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23086.1.S1_at--761--4471Chr01:521639..521663 (25 bp)
GCCTGCTATAACGATACCGCATTTC
LOC_Os01g01970
OsAffx.23086.1.S1_at--989--4271Chr01:521638..521662 (25 bp)
CCTGCTATAACGATACCGCATTTCA
LOC_Os01g01970
OsAffx.23086.1.S1_at--811--3771Chr01:521637..521661 (25 bp)
CTGCTATAACGATACCGCATTTCAG
LOC_Os01g01970
OsAffx.23086.1.S1_at--810--9071Chr01:521636..521660 (25 bp)
TGCTATAACGATACCGCATTTCAGA
LOC_Os01g01970
OsAffx.23086.1.S1_at--421--4871Chr01:521635..521659 (25 bp)
GCTATAACGATACCGCATTTCAGAG
LOC_Os01g01970
OsAffx.23086.1.S1_at--397--3691Chr01:521634..521658 (25 bp)
CTATAACGATACCGCATTTCAGAGT
LOC_Os01g01970
OsAffx.23086.1.S1_at--890--10171Chr01:521633..521657 (25 bp)
TATAACGATACCGCATTTCAGAGTA
LOC_Os01g01970
OsAffx.23086.1.S1_at--372--351Chr01:521632..521656 (25 bp)
ATAACGATACCGCATTTCAGAGTAC
LOC_Os01g01970
Target Sequence 
GCCTGCTATAACGATACCGCATTTCAGAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis