Browse Element(s) Details


Os.1637.1.S1_at

Description gb:AK103194.1
DB_XREF= gi:32988403
TID=Os.1637.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acetoacyl-CoA-thiolase (P0439B06.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121P11, full insert sequence.
FL= gb:AK103194.1 gb:AK101017.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0202010/11acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01970OsAffx.23086.1.S1_s_at11/111+521602..524804expressed protein
LOC_Os01g01970OsAffx.23086.1.S1_at8/111+521602..524804expressed protein
LOC_Os01g01970Os.22967.1.S1_s_at1/111+521602..524804expressed protein
LOC_Os01g01980OsAffx.23087.1.S1_at11/111+526169..526810hypothetical protein
LOC_Os01g01990OsAffx.10875.1.S1_at11/111+530588..530941expressed protein
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02010Os.56224.1.S1_at11/111+540227..541297expressed protein
LOC_Os01g02020Os.1637.1.S1_at10/111+545947..549427acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed
LOC_Os01g02040Os.11832.1.S1_at11/111+550827..554817transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g02050Os.49998.1.S1_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02050Os.33406.1.A1_x_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02060Os.12560.1.S1_s_at11/111+573291..576371Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003985molecular_functionacetyl-CoA C-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1637.1.S1_at--182--1571Chr01:548245..548269 (25 bp)
AGCTCTTGCTATTCCAAAGGCTGTA
LOC_Os01g02020
Os.1637.1.S1_at--1030--8331Chr01:548263..548287 (25 bp)
GGCTGTATCAAATGCGGGTCTCCAA
LOC_Os01g02020
Os.1637.1.S1_at--560--4671Chr01:548276..548300 (25 bp)
GCGGGTCTCCAAACTTCACAAATAG
LOC_Os01g02020
Os.1637.1.S1_at--283--5391NONE
GAAGCTTCTTGGTATTCCTTCGGGA
NONE
Os.1637.1.S1_at--851--8651Chr01:548575..548599 (25 bp)
TGGGCCATCCTATTGGTTGCAGTGG
LOC_Os01g02020
Os.1637.1.S1_at--381--291Chr01:548610..548841 (25 bp)
ATAGTCACTTTGCTCGGGATTCTTA
LOC_Os01g02020
Os.1637.1.S1_at--2--9492Chr07:15986556..15986598 (24 bp)
TCTGCCCTTGTTGTGGAACTCATGC
NONE
Os.1637.1.S1_at--241--2171Chr01:549151..549175 (25 bp)
ACACGTTCCTCGTTGTGAAGTTGGC
LOC_Os01g02020
Os.1637.1.S1_at--712--10331Chr01:549247..549271 (25 bp)
TTTACTGGGCGTTCATCCATGATGT
LOC_Os01g02020
Os.1637.1.S1_at--424--3091Chr01:549297..549321 (25 bp)
AATAAGATGGCTGTGCACTACCGCA
LOC_Os01g02020
Os.1637.1.S1_at--504--5111Chr01:549311..549335 (25 bp)
GCACTACCGCACGAGTCTTGTATAA
LOC_Os01g02020
Target Sequence 
AGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTT
TCTCCGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCGGGAAAGCTTAACCTAAGTGGTGGTGGTGTTTCT
CTGGGCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAATGGAAAGAT
TGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATGCAACCATCACTATTTACAC
GTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTT
ATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGTGCAC
TACCGCACGAGTCTTGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis