Browse Element(s) Details


OsAffx.10875.1.S1_at

Description tigr:9629.m00106
TID=OsAffx.10875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0199011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01930NANA1+506189..506914hypothetical protein
LOC_Os01g01940Os.37423.1.S1_at11/111+507554..508944expressed protein
LOC_Os01g01950OsAffx.23050.1.S1_x_at11/111+509642..510304hypothetical protein
LOC_Os01g01960Os.6597.1.S1_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01960Os.6597.2.S1_x_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01970OsAffx.23086.1.S1_s_at11/111+521602..524804expressed protein
LOC_Os01g01970OsAffx.23086.1.S1_at8/111+521602..524804expressed protein
LOC_Os01g01970Os.22967.1.S1_s_at1/111+521602..524804expressed protein
LOC_Os01g01980OsAffx.23087.1.S1_at11/111+526169..526810hypothetical protein
LOC_Os01g01990OsAffx.10875.1.S1_at11/111+530588..530941expressed protein
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02010Os.56224.1.S1_at11/111+540227..541297expressed protein
LOC_Os01g02020Os.1637.1.S1_at10/111+545947..549427acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed
LOC_Os01g02040Os.11832.1.S1_at11/111+550827..554817transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10875.1.S1_at--481--8671Chr01:530623..530647 (25 bp)
TGTGAACTACCGGATCCGGTTGCCA
LOC_Os01g01990
OsAffx.10875.1.S1_at--507--9971Chr01:530630..530654 (25 bp)
TACCGGATCCGGTTGCCACAAGTTT
LOC_Os01g01990
OsAffx.10875.1.S1_at--213--7731Chr01:530657..530681 (25 bp)
GGTGGCCATATCCTGGCTCGATTGT
LOC_Os01g01990
OsAffx.10875.1.S1_at--621--251Chr01:530664..530688 (25 bp)
ATATCCTGGCTCGATTGTGGCCTCT
LOC_Os01g01990
OsAffx.10875.1.S1_at--40--8311Chr01:530707..530731 (25 bp)
GGCTATGGCGGGTGCCTCTCTTCCA
LOC_Os01g01990
OsAffx.10875.1.S1_at--671--3791Chr01:530737..530761 (25 bp)
CTCCCTGGTGCGACGGCTACCGGAT
LOC_Os01g01990
OsAffx.10875.1.S1_at--308--9451Chr01:530761..530785 (25 bp)
TCTGGCCACCGCGAGCTCAGGTGAT
LOC_Os01g01990
OsAffx.10875.1.S1_at--950--1791Chr01:530768..530792 (25 bp)
ACCGCGAGCTCAGGTGATCCACGTG
LOC_Os01g01990
OsAffx.10875.1.S1_at--517--1051Chr01:530779..530803 (25 bp)
AGGTGATCCACGTGAGGTCGCCTCT
LOC_Os01g01990
OsAffx.10875.1.S1_at--1001--5011Chr01:530854..530878 (25 bp)
GCAGTGGCGGCTGCCTATTCCATTC
LOC_Os01g01990
OsAffx.10875.1.S1_at--1077--10191Chr01:530869..530893 (25 bp)
TATTCCATTCCCTAGCCCGGTGCAG
LOC_Os01g01990
Target Sequence 
TGTGAACTACCGGATCCGGTTGCCACAAGTTTGGGGTGGCCATATCCTGGCTCGATTGTGGCCTCTTCCTCTCCTCTACC
CGATGGCTATGGCGGGTGCCTCTCTTCCACTCCCCTCCCTGGTGCGACGGCTACCGGATCTGGCCACCGCGAGCTCAGGT
GATCCACGTGAGGTCGCCTCTTCCTCTCCCCGGCTCTACAATGGCCTCTTCCTCTCCTCTATGTGGCGGCGGCAGTGGCG
GCTGCCTATTCCATTCCCTAGCCCGGTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis