Browse Element(s) Details


Os.11832.1.S1_at

Description gb:AK101096.1
DB_XREF= gi:32986305
TID=Os.11832.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (P0439B06.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024N16, full insert sequence.
FL= gb:AK101096.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0204011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01980OsAffx.23087.1.S1_at11/111+526169..526810hypothetical protein
LOC_Os01g01990OsAffx.10875.1.S1_at11/111+530588..530941expressed protein
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02010Os.56224.1.S1_at11/111+540227..541297expressed protein
LOC_Os01g02020Os.1637.1.S1_at10/111+545947..549427acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed
LOC_Os01g02040Os.11832.1.S1_at11/111+550827..554817transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g02050Os.49998.1.S1_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02050Os.33406.1.A1_x_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02060Os.12560.1.S1_s_at11/111+573291..576371Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11832.1.S1_at--123--5071Chr01:551414..551438 (25 bp)
GCAGCTTGCATTCGACATTCAGCAT
LOC_Os01g02040
Os.11832.1.S1_at--458--131Chr01:551398..551422 (25 bp)
ATTCAGCATCTAGGAGACCCCGGAT
LOC_Os01g02040
Os.11832.1.S1_at--1116--4331Chr01:551294..551317 (24 bp)
CCAGGTGGTGCGTGTTCTTGATAGC
LOC_Os01g02040
Os.11832.1.S1_at--88--6491Chr01:551275..551299 (25 bp)
GATAGCTTAGCTGACGTCGATCTAA
LOC_Os01g02040
Os.11832.1.S1_at--116--9791Chr01:551253..551277 (25 bp)
TAAGCAATGGTATTCAGCCTGGTAA
LOC_Os01g02040
Os.11832.1.S1_at--737--6711Chr01:551094..551118 (25 bp)
GTTCGAGGCCCTTGTAATCATAGTC
LOC_Os01g02040
Os.11832.1.S1_at--661--10831Chr01:550999..551023 (25 bp)
TTGTGGCCATCTCTGTCAACTAGGA
LOC_Os01g02040
Os.11832.1.S1_at--251--2991Chr01:550972..550996 (25 bp)
AATGTATATCATGCGTCCCACTAAG
LOC_Os01g02040
Os.11832.1.S1_at--299--1971Chr01:550928..550952 (25 bp)
ACTGAGCGTGCCTGATTCTACAAAA
LOC_Os01g02040
Os.11832.1.S1_at--13--10711Chr01:550853..550877 (25 bp)
TTGCCTCTGTTGGTGGTGACTGAAC
LOC_Os01g02040
Os.11832.1.S1_at--1025--5431Chr01:550832..550856 (25 bp)
GAACCTGCATATTCCACTCTATATT
LOC_Os01g02040
Target Sequence 
GCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGGTGGTGCGTGTTCTTGATAGCTTAGCTGACGT
CGATCTAAGCAATGGTATTCAGCCTGGTAAGAGCGAAATGTTCAATGTGGCAAACACGGCAGAAATCAGGCTGTTTCAGC
GGATGGCTTTTGGTAGCCAAGATTTCACAACTGATTTCACCCAATCTAGCTGGGATAGTCGTAGTAGAGATGTTGATGCC
TCTGGTTCGAGGCCCTTGTAATCATAGTCTAATACTCCTCTAATTAGCTAGGGTATTGTTGCATTGGATTTGTTTCATCT
GATTTTGTTTTCTTCTTTTTTGTGGCCATCTCTGTCAACTAGGAGTAATGTATATCATGCGTCCCACTAAGAAAAGTGTA
TATTGATTGCACTGAGCGTGCCTGATTCTACAAAATCTGACAGACAGAAGATTTACTAGTACTAGCCCTTGAAGGAACCA
ATGAATTGCCTCTGTTGGTGGTGACTGAACCTGCATATTCCACTCTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis