Browse Element(s) Details


Os.38048.2.S1_x_at

Description gb:NM_183498.1
DB_XREF= gi:34894123
GEN=P0005A05.27
TID=Os.38048.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005A05.27 (P0005A05.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0005A05.27 (P0005A05.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0179010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein
LOC_Os01g01810OsAffx.10645.1.S1_at3/111+429237..429554hypothetical protein
LOC_Os01g01820OsAffx.10825.1.S1_s_at11/111+433097..437330hypothetical protein
LOC_Os01g01820OsAffx.10825.2.S1_at11/111+433097..437330hypothetical protein
LOC_Os01g01830Os.15541.2.S1_x_at11/111+438130..444133Prolyl endopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38048.2.S1_x_at--1121--5631Chr01:414952..414976 (25 bp)
GACAGTAACGGCTCAGATCCATTTA
LOC_Os01g01790
Os.38048.2.S1_x_at--335--6371Chr01:414862..414961 (25 bp)
GATCCATTTAGTGGTCTCTATGTGG
LOC_Os01g01790
Os.38048.2.S1_x_at--1121--2811Chr01:414813..414837 (25 bp)
AAGTTGTGCAGCTCCGTCGAAAGTT
LOC_Os01g01790
Os.38048.2.S1_x_at--775--10611Chr01:414790..414814 (25 bp)
TTCGGCCATTGGAACAGCACAGATG
LOC_Os01g01790
Os.38048.2.S1_x_at--1022--8611Chr01:414725..414749 (25 bp)
TGGTGATCTGAGTGTCCCTGCTGGA
LOC_Os01g01790
Os.38048.2.S1_x_at--637--5651Chr01:414633..414656 (24 bp)
GACAGATAACATTCCGTGCTAAGAT
LOC_Os01g01790
Os.38048.2.S1_x_at--1042--5951Chr01:414589..414613 (25 bp)
GAGAACCGTGGTGCATACCCTGAAG
LOC_Os01g01790
Os.38048.2.S1_x_at--205--3731Chr01:413834..414323 (25 bp)
CTCAATGGCAAGAGGGTGACACTTC
LOC_Os01g01790
Os.38048.2.S1_x_at--926--6131NONE
GAGGGTGACACTTCTAGCACGATCC
NONE
Os.38048.2.S1_x_at--180--10231Chr01:413470..413494 (25 bp)
TTTGACCGGCTTAAACTTCCAGAGT
LOC_Os01g01790
Os.38048.2.S1_x_at--951--5251Chr01:413431..413455 (25 bp)
GAATCGAGCTGTTCTCACATGCAAA
LOC_Os01g01790
Target Sequence 
GACAGTAACGGCTCAGATCCATTTAGTGGTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCCG
TCGAAAGTTCGGCCATTGGAACAGCACAGATGAAGTGGAGTTTTTCGAGTATGTTGAAGCAGTAAAGTTGACTGGTGATC
TGAGTGTCCCTGCTGGACAGATAACATTCCGTGCTAAGATTGGGAAGGGCAAACGTCTTGAGAACCGTGGTGCATACCCT
GAAGAATTTGGTGTGATTGCTAGCTATAAAGGTCAAGGGAGAATTGCACAGCCTGGCTTCAAAAATCCCCGGTGGGTGGA
TGGTGAGCTATTGGTGCTCAATGGCAAGAGGGTGACACTTCTAGCACGATCCCACACCTTGGAGGTGCGGAGCTTGGTTT
CCTGTACAGCGTGCCTGAGCAGAGTTTCTTGGTACTCTTTGACCGGCTTAAACTTCCAGAGTGATGAGATTATGCTGAAT
CGAGCTGTTCTCACATGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38048.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis