Browse Element(s) Details


OsAffx.10822.1.S1_at

Description tigr:9629.m00081
TID=OsAffx.10822.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=exonuclease, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0177011/11exonuclease family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01720Os.27278.1.S1_s_at11/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.27278.1.S1_at10/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.32421.1.A1_at9/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01730OsAffx.23038.1.S1_x_at11/111+386853..387425hypothetical protein
LOC_Os01g01730OsAffx.23038.1.S1_at11/111+386853..387425hypothetical protein
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein
LOC_Os01g01810OsAffx.10645.1.S1_at3/111+429237..429554hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10822.1.S1_at--98--8831Chr01:407022..407046 (25 bp)
TGTTGGACACCTTCGTCAAGCCGCA
LOC_Os01g01770
OsAffx.10822.1.S1_at--1130--9151Chr01:407100..407124 (25 bp)
TGCGCGACGCCATGACGCCCAAGCA
LOC_Os01g01770
OsAffx.10822.1.S1_at--397--8011Chr01:407193..407217 (25 bp)
GGAGGGCCCGGATCCTGGTCGGCCA
LOC_Os01g01770
OsAffx.10822.1.S1_at--1002--8531Chr01:407223..407247 (25 bp)
TGGACCACGACCTCGAGTCGCTGGG
LOC_Os01g01770
OsAffx.10822.1.S1_at--812--1131Chr01:407238..407262 (25 bp)
AGTCGCTGGGCATGGACTACCCGGA
LOC_Os01g01770
OsAffx.10822.1.S1_at--858--8631Chr01:407244..407268 (25 bp)
TGGGCATGGACTACCCGGAGTACCT
LOC_Os01g01770
OsAffx.10822.1.S1_at--572--811Chr01:407249..407273 (25 bp)
ATGGACTACCCGGAGTACCTGAAGC
LOC_Os01g01770
OsAffx.10822.1.S1_at--588--9951Chr01:407255..407279 (25 bp)
TACCCGGAGTACCTGAAGCGGGACA
LOC_Os01g01770
OsAffx.10822.1.S1_at--661--8851Chr01:407298..407322 (25 bp)
TGATGAAGACGAGCAACAGCCGCCT
LOC_Os01g01770
OsAffx.10822.1.S1_at--349--2771Chr01:407303..407327 (25 bp)
AAGACGAGCAACAGCCGCCTCAGCA
LOC_Os01g01770
OsAffx.10822.1.S1_at--8--9671Chr01:407322..407346 (25 bp)
TCAGCAACTCGCTCAAGTACCTCAC
LOC_Os01g01770
Target Sequence 
TGTTGGACACCTTCGTCAAGCCGCACATCCCCGTCACGCACTACCGCTACGACACCACCGGCATCCGCCCCGAGCACCTG
CGCGACGCCATGACGCCCAAGCAGGCGGCGCGCCGGGTGCAGGAGCTGCTGCTCAACGGCGAGCCGGCGTGGAAGGCGCG
GAGCAGCCGCGGGAGGGCCCGGATCCTGGTCGGCCACGGCCTGGACCACGACCTCGAGTCGCTGGGCATGGACTACCCGG
AGTACCTGAAGCGGGACACGGCGAGGTACCCGGCGCTGATGAAGACGAGCAACAGCCGCCTCAGCAACTCGCTCAAGTAC
CTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis