Browse Element(s) Details


Os.34815.1.S1_at

Description gb:AK070027.1
DB_XREF= gi:32980051
TID=Os.34815.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005A05.26 (P0005A05.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035K17, full insert sequence.
FL= gb:AK070027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0178011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01730OsAffx.23038.1.S1_x_at11/111+386853..387425hypothetical protein
LOC_Os01g01730OsAffx.23038.1.S1_at11/111+386853..387425hypothetical protein
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein
LOC_Os01g01810OsAffx.10645.1.S1_at3/111+429237..429554hypothetical protein
LOC_Os01g01820OsAffx.10825.1.S1_s_at11/111+433097..437330hypothetical protein
LOC_Os01g01820OsAffx.10825.2.S1_at11/111+433097..437330hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34815.1.S1_at--232--6091Chr01:412292..412316 (25 bp)
GAGTAGCACTTGCATCTGATCAGCA
LOC_Os01g01780
Os.34815.1.S1_at--779--971Chr01:412320..412344 (25 bp)
AGGAGCTATTGTGGTCTGATTTGAA
LOC_Os01g01780
Os.34815.1.S1_at--984--10571Chr01:412345..412369 (25 bp)
TTCTAGTATGATCCTGCAGCTTCTT
LOC_Os01g01780
Os.34815.1.S1_at--937--10551Chr01:412365..412389 (25 bp)
TTCTTCATCCGAGAAGGCGCTGAAT
LOC_Os01g01780
Os.34815.1.S1_at--627--8371Chr01:412380..412404 (25 bp)
GGCGCTGAATTGTGTTCCTGACATT
LOC_Os01g01780
Os.34815.1.S1_at--414--7411Chr01:412391..412415 (25 bp)
GTGTTCCTGACATTATTGGTCTAAC
LOC_Os01g01780
Os.34815.1.S1_at--198--5451Chr01:412420..412444 (25 bp)
GAACCCTGACATAGTGGAGCTTAGT
LOC_Os01g01780
Os.34815.1.S1_at--199--4891Chr01:412448..412472 (25 bp)
GCTTTAGGAGCTGTCATTTTCACAT
LOC_Os01g01780
Os.34815.1.S1_at--784--2551Chr01:412509..412533 (25 bp)
AACGGAGTGTTTTGGGACCACAGCT
LOC_Os01g01780
Os.34815.1.S1_at--742--2151Chr01:412528..412552 (25 bp)
ACAGCTGAAGATAAGGTGTCCCGTG
LOC_Os01g01780
Os.34815.1.S1_at--1072--7451Chr01:412543..412567 (25 bp)
GTGTCCCGTGAATTTTTATCTTTCT
LOC_Os01g01780
Target Sequence 
GAGTAGCACTTGCATCTGATCAGCAGCAAGGAGCTATTGTGGTCTGATTTGAATTCTAGTATGATCCTGCAGCTTCTTCA
TCCGAGAAGGCGCTGAATTGTGTTCCTGACATTATTGGTCTAACAGAAGAACCCTGACATAGTGGAGCTTAGTTGTGCTT
TAGGAGCTGTCATTTTCACATTTGTTGATTTTCTAATCTAACGGGTTGTAACAGTTAAACGGAGTGTTTTGGGACCACAG
CTGAAGATAAGGTGTCCCGTGAATTTTTATCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis