Browse Element(s) Details


Os.20521.1.S2_at

Description gb:AK099287.1
DB_XREF= gi:32984496
TID=Os.20521.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005A05.18 (P0005A05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127H11, full insert sequence.
FL= gb:AK069033.1 gb:AK059300.1 gb:AK073331.1 gb:AK119792.1 gb:AK099287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g017008/11RING-box protein 1, putative, expressed
LOC_Os03g144901/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01700Os.20521.1.S2_at8/111+368633..371215RING-box protein 1, putative, expressed
LOC_Os01g01710Os.1005.1.S1_at10/111+371530..3775181-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g01720Os.27278.1.S1_s_at11/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.27278.1.S1_at10/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.32421.1.A1_at9/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01730OsAffx.23038.1.S1_x_at11/111+386853..387425hypothetical protein
LOC_Os01g01730OsAffx.23038.1.S1_at11/111+386853..387425hypothetical protein
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0016567biological_processprotein ubiquitination
GO:0000151cellular_componentubiquitin ligase complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0031463cellular_componentCul3-RING ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20521.1.S2_at--574--3892Chr03:7846186..7846434 (25 bp)
CTGGGCATGGGATATCGTCGTCGAC
LOC_Os03g14490
Os.20521.1.S2_at--923--10371Chr01:370776..370800 (25 bp)
TTTTCACTTCCATTGCATCAGCAGG
LOC_Os01g01700
Os.20521.1.S2_at--72--1991NONE
ACTCGCCAAGTGTGCCCGTTAGATA
NONE
Os.20521.1.S2_at--417--2211Chr01:371004..371028 (25 bp)
ACAAGCCGTATCATCTGCCGAACAG
LOC_Os01g01700
Os.20521.1.S2_at--238--511Chr01:371033..371057 (25 bp)
ATCGTTAGCTTCTTTTGATGCCTTA
LOC_Os01g01700
Os.20521.1.S2_at--636--591Chr01:371050..371074 (25 bp)
ATGCCTTACATCTATCGCTGGACGT
LOC_Os01g01700
Os.20521.1.S2_at--1142--6811Chr01:371073..371097 (25 bp)
GTTTATCGTGCGTACTTGTCCCATA
LOC_Os01g01700
Os.20521.1.S2_at--437--7491Chr01:371167..371191 (25 bp)
GTGGGTCACATATCAACTTGCTATT
LOC_Os01g01700
Os.20521.1.S2_at--669--10411Chr01:371190..371214 (25 bp)
TTATTGTATTCAGCGGTTCTCTCTC
LOC_Os01g01700
Os.20521.1.S2_at--1026--7891Chr01:371204..371228 (25 bp)
GGTTCTCTCTCTATTTTGCCTTAAG
NONE
Os.20521.1.S2_at--615--10691Chr01:371219..371243 (25 bp)
TTGCCTTAAGCTGTGGTACCATTTT
NONE
Target Sequence 
CTGGGCATGGGATATCGTCGTCGACAACTGCGCCATCTGCCGCAACCACATCATGGATCTATGCATCGAGTGCCAGGCGA
ACCAGGCCAGCGCCACCAGTGAGGAGTGCACTGTCGCTTGGGGTGTCTGTAATCATGNTTTTCACTTCCATTGCATCAGC
AGGTGGCTCAAGACTCGCCAAGTGTGCCCGTTAGATAACAGTGAATGGGAATTTCAGAAATATGGGCACTAGACACCACC
TGCTGTCTGCGCTTGTTTGTTGCCACGGCTGCGCTACAAACACAAGCCGTATCATCTGCCGAACAGCTCCATCGTTAGCT
TCTTTTGATGCCTTACATCTATCGCTGGACGTTTATCGTGCGTACTTGTCCCATACAGGGATTGTGTTTGGATGATTTGT
AGAGAGGGTACTGTATGGCATAAGATCCTTCATATTAATGTTCTGTGGGTCACATATCAACTTGCTATTATTGTATTCAG
CGGTTCTCTCTCTATTTTGCCTTAAGCTGTGGTACCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20521.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis