Browse Element(s) Details


OsAffx.7837.1.S1_at

Description tigr:9640.m03875
TID=OsAffx.7837.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3969011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39650Os.27347.1.S1_a_at4/1112+24445323..24449233expressed protein
LOC_Os12g39660Os.9632.1.S2_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39660Os.9632.1.S1_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39670OsAffx.32099.1.S1_at9/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.27541.1.A1_at2/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.50246.1.S2_at1/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.35524.1.S2_at1/1112+24458983..24467282hypothetical protein
LOC_Os12g39680OsAffx.20035.1.S1_at11/1112+24468227..24471462expressed protein
LOC_Os12g39690OsAffx.7837.1.S1_at11/1112+24472744..24473172hypothetical protein
LOC_Os12g39700NANA12+24481038..24491950retrotransposon protein, putative, unclassified
LOC_Os12g39710Os.47957.1.S1_at11/1112+24493169..24496268expressed protein
LOC_Os12g39720OsAffx.32100.2.S1_s_at11/1112+24497951..24500166expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7837.1.S1_at--820--4511Chr12:24472805..24472901 (25 bp)
GCCGACTACTTCGATCTTGTGAGAA
LOC_Os12g39690
OsAffx.7837.1.S1_at--812--4091Chr12:24472807..24472903 (25 bp)
CGACTACTTCGATCTTGTGAGAAAT
LOC_Os12g39690
OsAffx.7837.1.S1_at--1117--2011Chr12:24472809..24472905 (25 bp)
ACTACTTCGATCTTGTGAGAAATGT
LOC_Os12g39690
OsAffx.7837.1.S1_at--873--5971Chr12:24472897..24472921 (25 bp)
GAGAAATGTGAAATCTTTGCAGAGA
LOC_Os12g39690
OsAffx.7837.1.S1_at--159--3073Chr12:24472908..24472932 (25 bp)
AATCTTTGCAGAGAATGGCGTGGAC
LOC_Os12g39690
OsAffx.7837.1.S1_at--870--3332Chr12:24472936..24472960 (25 bp)
CACGGCAAGCCGACGCACAAGGTGG
LOC_Os12g39690
OsAffx.7837.1.S1_at--668--3292Chr12:24472951..24472975 (25 bp)
CACAAGGTGGTGCACAGGGTGACGG
LOC_Os12g39690
OsAffx.7837.1.S1_at--970--8391Chr12:24473014..24473038 (25 bp)
GGCGCGACGGCGAACATCATGAACA
LOC_Os12g39690
OsAffx.7837.1.S1_at--579--4571Chr12:24473015..24473039 (25 bp)
GCGCGACGGCGAACATCATGAACAT
LOC_Os12g39690
OsAffx.7837.1.S1_at--99--5751Chr12:24473019..24473043 (25 bp)
GACGGCGAACATCATGAACATGGTG
LOC_Os12g39690
OsAffx.7837.1.S1_at--905--4591Chr12:24473023..24473047 (25 bp)
GCGAACATCATGAACATGGTGGAGA
LOC_Os12g39690
Target Sequence 
GCCGACTACTTCGATCTTGTGAGAAATGTGAAATCTTTGCAGAGAATGGCGTGGACGAGCACGGCAAGCCGACGCACAAG
GTGGTGCACAGGGTGACGGACGCCGACAACAACCTCCGTGCCGGCAACCCGTTCCCCGGCGCGACGGCGAACATCATGAA
CATGGTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis