Browse Element(s) Details


Os.46182.1.S1_at

Description gb:AK119516.1
DB_XREF= gi:37989139
TID=Os.46182.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46182 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C04, full insert sequence.
FL= gb:AK119516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3962011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39590OsAffx.21171.3.S1_x_at3/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.21171.4.S1_x_at2/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.20729.1.S1_x_at2/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.1674.1.S1_at1/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.21171.4.S1_at1/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39600NANA12+24406461..24409368retrotransposon protein, putative, unclassified
LOC_Os12g39610NANA12+24410223..24415808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39620Os.46182.1.S1_at11/1112+24421410..24425728Leucine Rich Repeat family protein, expressed
LOC_Os12g39630OsAffx.20033.1.S1_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39630Os.15247.1.S1_s_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39640Os.47453.1.A1_s_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.20034.1.S1_x_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640Os.47453.1.A1_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.16011.1.S1_at1/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39650Os.27347.1.S1_a_at4/1112+24445323..24449233expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0042828biological_processresponse to pathogen
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46182.1.S1_at--1044--51Chr12:24424972..24424996 (25 bp)
ATTGACCACTGCATAGACCTGAAGG
LOC_Os12g39620
Os.46182.1.S1_at--1038--4951Chr12:24425009..24425033 (25 bp)
GCATATGTGAAATCAGTTCCCTGGA
LOC_Os12g39620
Os.46182.1.S1_at--183--2391Chr12:24425049..24425073 (25 bp)
AAACTGCCATGACCTCACAGAGCTT
LOC_Os12g39620
Os.46182.1.S1_at--280--3431Chr12:24425066..24425090 (25 bp)
CAGAGCTTCCATATGAGCTGGGCAA
LOC_Os12g39620
Os.46182.1.S1_at--1--2691Chr12:24425089..24425113 (25 bp)
AAGCTGCATTGCCTGAGCATCCTAA
LOC_Os12g39620
Os.46182.1.S1_at--638--1471Chr12:24425104..24425128 (25 bp)
AGCATCCTAAGGGTATACGCCTGCC
LOC_Os12g39620
Os.46182.1.S1_at--377--4171Chr12:24425147..24425171 (25 bp)
CGCCTTCGGTATGCAGCCTGAAGAG
LOC_Os12g39620
Os.46182.1.S1_at--1128--2251Chr12:24425176..24425200 (25 bp)
AAATACCTCGACATTTCGCAGTGTG
LOC_Os12g39620
Os.46182.1.S1_at--166--191Chr12:24425188..24425212 (25 bp)
ATTTCGCAGTGTGTCAACCTGACGG
LOC_Os12g39620
Os.46182.1.S1_at--342--1471Chr12:24425265..24425289 (25 bp)
AGAATGCTCGCGACTGAGGAGCCTC
LOC_Os12g39620
Os.46182.1.S1_at--1091--6871Chr12:24425488..24425512 (25 bp)
GTATATTTTTCCCTGTCTAATACAG
LOC_Os12g39620
Target Sequence 
ATTGACCACTGCATAGACCTGAAGGAGCTACCATCTAGCATATGTGAAATCAGTTCCCTGGAGAGCATCTCCATCCCAAA
CTGCCATGACCTCACAGAGCTTCCATATGAGCTGGGCAAGCTGCATTGCCTGAGCATCCTAAGGGTATACGCCTGCCCGG
CTCTGTGGCGGCTCCCGCCTTCGGTATGCAGCCTGAAGAGGCTGAAATACCTCGACATTTCGCAGTGTGTCAACCTGACG
GACCTCCCTGAGGAGCTCGGTCACCTGACAAGCCTGGAGAAGATCGACATGCGAGAATGCTCGCGACTGAGGAGCCTCCC
GAGGTCGTCCTCATCGCTCAAGTCCCTCGGGCACGTCGTGTGCGACGAGGAGACGGCGTTGCTGTGGAGGGAAGCTGAGC
AGGTCATCCCAGACCTCCGGGTTCAGGTAGCAGAAGAGTGTTATAACCTGGACTGGCTTGTAGACTGATGTTCCTGGATG
CTTTTGGCTCCAAGCTCACCTTTGTACAGATGATGTGTATATTTTTCCCTGTCTAATACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis