Browse Element(s) Details


OsAffx.22233.5.S1_x_at

Description gb:AK106665.1
DB_XREF= gi:32991874
TID=OsAffx.22233.5
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H06, full insert sequence.
FL= gb:AK106665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1477011/11expressed protein
LOC_Os01g123743/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14720Os.34089.1.S1_at11/111+8231427..8232635expressed protein
LOC_Os01g14730Os.40855.2.S1_x_at10/111+8235606..8236518hypothetical protein
LOC_Os01g14730Os.40855.4.S1_x_at3/111+8235606..8236518hypothetical protein
LOC_Os01g14730Os.40855.4.S1_at1/111+8235606..8236518hypothetical protein
LOC_Os01g14750NANA1+8239428..8239700hypothetical protein
LOC_Os01g14760OsAffx.23249.1.S1_at11/111+8244542..8245306hypothetical protein
LOC_Os01g14770OsAffx.22233.5.S1_x_at11/111+8256318..8258315expressed protein
LOC_Os01g14780NANA1+8264713..8266071hypothetical protein
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22233.5.S1_x_at--407--3792Chr01:8256900..8257262 (25 bp)
CTCGATCCTACGAGTGTTAGCTCTT
LOC_Os01g14770
OsAffx.22233.5.S1_x_at--949--9372Chr01:8256899..8257261 (25 bp)
TCGATCCTACGAGTGTTAGCTCTTT
LOC_Os01g14770
OsAffx.22233.5.S1_x_at--419--4032Chr01:8256898..8257260 (25 bp)
CGATCCTACGAGTGTTAGCTCTTTC
LOC_Os01g14770
OsAffx.22233.5.S1_x_at--25--3711Chr01:8256780..8256804 (25 bp)
CTAGATGGGAACGATGCTCTGCCAT
LOC_Os01g14770
OsAffx.22233.5.S1_x_at--123--10051Chr01:8256779..8256803 (25 bp)
TAGATGGGAACGATGCTCTGCCATC
LOC_Os01g14770
OsAffx.22233.5.S1_x_at--494--1311Chr01:8256778..8256802 (25 bp)
AGATGGGAACGATGCTCTGCCATCC
LOC_Os01g14770
OsAffx.22233.5.S1_x_at--1071--6251Chr01:8256777..8256801 (25 bp)
GATGGGAACGATGCTCTGCCATCCG
LOC_Os01g14770
OsAffx.22233.5.S1_x_at--1072--791Chr01:8256776..8256800 (25 bp)
ATGGGAACGATGCTCTGCCATCCGA
LOC_Os01g14770
OsAffx.22233.5.S1_x_at--252--7191Chr01:8256659..8256770 (25 bp)
GTCCCAGCAAAACCGCCAAGTATGG
LOC_Os01g14770
OsAffx.22233.5.S1_x_at--288--9271Chr01:8256658..8256769 (25 bp)
TCCCAGCAAAACCGCCAAGTATGGG
LOC_Os01g14770
OsAffx.22233.5.S1_x_at--1047--3391Chr01:8256655..8256766 (25 bp)
CAGCAAAACCGCCAAGTATGGGTTC
LOC_Os01g14770
Target Sequence 
CTCGATCCTACGAGTGTTAGCTCTTTCTCCAAGATGGCGGCTGTGGGAGTTTCCTTTGTTTCTTTGTTGAATGCCGTCGC
ATGGCATTGTCGCCTGCCATCCGTCTCATACCTCTGGGAGCTAGATGGGAACGATGCTCTGCCATCCGATGAGAGTCCCA
GCAAAACCGCCAAGTATGGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22233.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis