Browse Element(s) Details


Os.34089.1.S1_at

Description gb:AK072886.1
DB_XREF= gi:32982909
TID=Os.34089.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149P13, full insert sequence.
FL= gb:AK072886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1472011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14690Os.37966.1.S1_a_at11/111+8209230..8211935expressed protein
LOC_Os01g14700OsAffx.11054.1.S1_at11/111+8226003..8226705hypothetical protein
LOC_Os01g14710OsAffx.23248.1.S1_at11/111+8229735..8230673heavy metal-associated domain containing protein
LOC_Os01g14720Os.34089.1.S1_at11/111+8231427..8232635expressed protein
LOC_Os01g14730Os.40855.2.S1_x_at10/111+8235606..8236518hypothetical protein
LOC_Os01g14730Os.40855.4.S1_x_at3/111+8235606..8236518hypothetical protein
LOC_Os01g14730Os.40855.4.S1_at1/111+8235606..8236518hypothetical protein
LOC_Os01g14750NANA1+8239428..8239700hypothetical protein
LOC_Os01g14760OsAffx.23249.1.S1_at11/111+8244542..8245306hypothetical protein
LOC_Os01g14770OsAffx.22233.5.S1_x_at11/111+8256318..8258315expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34089.1.S1_at--607--8091Chr01:8232003..8232027 (25 bp)
GGAGCCAATGCCAGTGATTGCCAAT
LOC_Os01g14720
Os.34089.1.S1_at--303--5891Chr01:8231955..8231979 (25 bp)
GAGCGTTCTGTCACGTCTACTGAAG
LOC_Os01g14720
Os.34089.1.S1_at--91--9011Chr01:8231935..8231959 (25 bp)
TGAAGGAGTTCATCACCTCATTCGC
LOC_Os01g14720
Os.34089.1.S1_at--386--1751Chr01:8231921..8231945 (25 bp)
ACCTCATTCGCTGTGGTTGGGCAGA
LOC_Os01g14720
Os.34089.1.S1_at--1025--3391Chr01:8231900..8231924 (25 bp)
CAGACTGGTCCAGGAATGGGCTTAA
LOC_Os01g14720
Os.34089.1.S1_at--240--7311Chr01:8231860..8231884 (25 bp)
GTGCTGGATTAAACGCTGATATTGC
LOC_Os01g14720
Os.34089.1.S1_at--72--10871Chr01:8231830..8231854 (25 bp)
TTGGTTTCGGCATTGCCGGGCTGAA
LOC_Os01g14720
Os.34089.1.S1_at--123--10271Chr01:8231672..8231696 (25 bp)
TTTGTTCTCTTGTTTCATAGTCCCG
LOC_Os01g14720
Os.34089.1.S1_at--349--10331Chr01:8231660..8231684 (25 bp)
TTTCATAGTCCCGTCGATACTTTCT
LOC_Os01g14720
Os.34089.1.S1_at--3--331Chr01:8231644..8231668 (25 bp)
ATACTTTCTCTCATTAGCAGGGAGT
LOC_Os01g14720
Os.34089.1.S1_at--493--7651Chr01:8231625..8231649 (25 bp)
GGGAGTACTTTCAACTTCTTCTGTT
LOC_Os01g14720
Target Sequence 
GGAGCCAATGCCAGTGATTGCCAATGGTGCTAATGAGGAGGCTGTCCGGAGCGTTCTGTCACGTCTACTGAAGGAGTTCA
TCACCTCATTCGCTGTGGTTGGGCAGACTGGTCCAGGAATGGGCTTAAACATGGGATTTGGGGGTGCTGGATTAAACGCT
GATATTGCTGGCCTTGGTTTCGGCATTGCCGGGCTGAACCCTGGGGTGCCCGGTGCTGATAGGTGGAGGCAGCATCAGAT
ACTTGAGCTGGAGGTTTATCTGAAGAGGATTGAGCTTGTGCGTGAGCAAGTCACCGCCGCGCTAGATGAGCTCAGNNNNT
NNNANNNNTGATTTGTTCTCTTGTTTCATAGTCCCGTCGATACTTTCTCTCATTAGCAGGGAGTACTTTCAACTTCTTCT
GTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis