Browse Element(s) Details


OsAffx.11054.1.S1_at

Description tigr:9629.m01451
TID=OsAffx.11054.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1470011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14670Os.12851.1.S1_at11/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14670OsAffx.30146.1.S1_s_at1/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14690Os.37966.1.S1_a_at11/111+8209230..8211935expressed protein
LOC_Os01g14700OsAffx.11054.1.S1_at11/111+8226003..8226705hypothetical protein
LOC_Os01g14710OsAffx.23248.1.S1_at11/111+8229735..8230673heavy metal-associated domain containing protein
LOC_Os01g14720Os.34089.1.S1_at11/111+8231427..8232635expressed protein
LOC_Os01g14730Os.40855.2.S1_x_at10/111+8235606..8236518hypothetical protein
LOC_Os01g14730Os.40855.4.S1_x_at3/111+8235606..8236518hypothetical protein
LOC_Os01g14730Os.40855.4.S1_at1/111+8235606..8236518hypothetical protein
LOC_Os01g14750NANA1+8239428..8239700hypothetical protein
LOC_Os01g14760OsAffx.23249.1.S1_at11/111+8244542..8245306hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11054.1.S1_at--925--2331Chr01:8226208..8226232 (25 bp)
AAAGACATCTTGCATGCTGTCTCCA
LOC_Os01g14700
OsAffx.11054.1.S1_at--1005--611Chr01:8226221..8226242 (22 bp)
ATGCTGTCTCCACGCTACAAGGGAT
LOC_Os01g14700
OsAffx.11054.1.S1_at--831--3871Chr01:8226224..8226335 (25 bp)
CTGTCTCCACGCTACAAGGGATCAA
LOC_Os01g14700
OsAffx.11054.1.S1_at--206--3991Chr01:8226384..8226408 (25 bp)
CGTGGACCCGGTGAAGATCGTGCAC
LOC_Os01g14700
OsAffx.11054.1.S1_at--807--8991Chr01:8226395..8226419 (25 bp)
TGAAGATCGTGCACCGGCTGAAGAA
LOC_Os01g14700
OsAffx.11054.1.S1_at--55--511Chr01:8226400..8226424 (25 bp)
ATCGTGCACCGGCTGAAGAAGAAGT
LOC_Os01g14700
OsAffx.11054.1.S1_at--35--6191Chr01:8226502..8226526 (25 bp)
GAGGACGACGATGATCCGTGCCAGT
LOC_Os01g14700
OsAffx.11054.1.S1_at--338--5791Chr01:8226505..8226529 (25 bp)
GACGACGATGATCCGTGCCAGTGCC
LOC_Os01g14700
OsAffx.11054.1.S1_at--59--9091Chr01:8226607..8226631 (25 bp)
TGCTACTTCTACAAATCCTACAGTT
LOC_Os01g14700
OsAffx.11054.1.S1_at--798--2111Chr01:8226626..8226650 (25 bp)
ACAGTTACAGTTACAAGCCGTCGCC
LOC_Os01g14700
OsAffx.11054.1.S1_at--1154--10651Chr01:8226651..8226675 (25 bp)
TTCCTTTGGCTTTGGCTATCACCTA
LOC_Os01g14700
Target Sequence 
AAAGACATCTTGCATGCTGTCTCCACGCTACAAGGGATCAAGTCGATGGACATCGACGAGGAGAAGTGCACGCTGACGGT
GCTGGGCCCCGTGGACCCGGTGAAGATCGTGCACCGGCTGAAGAAGAAGTGCTTCGCGGCGGCGGTCGTCAGCGTCGAGG
ACGACAAGCCCAAGGAGCCGGATCCGCCGGCGCCGGAGAAGAAGAAGGAGGACGACGATGATCCGTGCCAGTGCCAGTGC
AAGGAGGCGGAGTGCGCCTGCGTGAAGGTGTGCGCGGCGAGCTGCCACCACAGCCCGTGCTCCCTGCCGGACTGCTACTT
CTACAAATCCTACAGTTACAGTTACAAGCCGTCGCCTTCCTTTGGCTTTGGCTATCACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis