Browse Element(s) Details


Os.12851.1.S1_at

Description gb:AK061046.1
DB_XREF= gi:32971064
TID=Os.12851.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative germin protein (P0034C11.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E11, full insert sequence.
FL= gb:AK061046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1467011/11Nectarin-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14610Os.874.1.S1_at11/111+8175701..8179897DNA replication complex GINS protein PSF2, putative, expressed
LOC_Os01g14620OsAffx.2006.1.S1_at11/111+8187070..8187456hypothetical protein
LOC_Os01g14630OsAffx.23247.1.S1_x_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14630OsAffx.23247.1.S1_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14640Os.51423.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14640Os.51423.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14650Os.28773.1.S1_at11/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14650OsAffx.8085.1.S1_x_at1/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14660OsAffx.22035.1.S1_x_at11/111+8198724..8199586Alpha-expansin 4 precursor, putative, expressed
LOC_Os01g14670Os.12851.1.S1_at11/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14670OsAffx.30146.1.S1_s_at1/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14690Os.37966.1.S1_a_at11/111+8209230..8211935expressed protein
LOC_Os01g14700OsAffx.11054.1.S1_at11/111+8226003..8226705hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12851.1.S1_at--427--2951Chr01:8200933..8200957 (25 bp)
AAGGCCTTCCAGATCGACGACGAGG
LOC_Os01g14670
Os.12851.1.S1_at--1043--10271Chr01:8200885..8200909 (25 bp)
TTTGCCCCCAAGAAGACCTAGACGA
LOC_Os01g14670
Os.12851.1.S1_at--484--351Chr01:8200851..8200875 (25 bp)
ATAAGGCGACGTATACATTGGAGAG
LOC_Os01g14670
Os.12851.1.S1_at--567--8371Chr01:8200847..8200871 (25 bp)
GGCGACGTATACATTGGAGAGATTT
LOC_Os01g14670
Os.12851.1.S1_at--729--10171Chr01:8200840..8200864 (25 bp)
TATACATTGGAGAGATTTGAGGTTT
LOC_Os01g14670
Os.12851.1.S1_at--270--5211Chr01:8200796..8200820 (25 bp)
GAATTGATTTGTCTGTGATTTGATG
LOC_Os01g14670
Os.12851.1.S1_at--1103--7171Chr01:8200786..8200810 (25 bp)
GTCTGTGATTTGATGATTAACTATA
LOC_Os01g14670
Os.12851.1.S1_at--777--5611Chr01:8200729..8200753 (25 bp)
GACACTTATTTGTGTAAGAGCGACA
LOC_Os01g14670
Os.12851.1.S1_at--574--10411Chr01:8200724..8200748 (25 bp)
TTATTTGTGTAAGAGCGACATGCAA
LOC_Os01g14670
Os.12851.1.S1_at--930--7051Chr01:8200716..8200740 (25 bp)
GTAAGAGCGACATGCAAAATGTAGT
LOC_Os01g14670
Os.12851.1.S1_at--199--8831Chr01:8200634..8200658 (25 bp)
TGATTAGTACAATCATTTTGGCTGG
LOC_Os01g14670
Target Sequence 
AAGGCCTTCCAGATCGACGACGAGGAGGTGGACAAGATCAAGGCCAAGTTTGCCCCCAAGAAGACCTAGACGANANAAGA
TTATAAGGCGACGTATACATTGGAGAGATTTGAGGTTTCAAACNTATCTTAAAATTTGAATTGATTTGTCTGTGATTTGA
TGATTAACTATATGTACNTGTCGATGATATAATGCCATCNTGATGACACTTATTTGTGTAAGAGCGACATGCAAAATGTA
GTAGTAATAGAGAAGTTTCTTGTAATAAGTTGCTGGGGAGAACGATGATGATTTGTTAATGATTAGTACAATCATTTTGG
CTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis