Browse Element(s) Details


OsAffx.22035.1.S1_x_at

Description tigr:9629.m01446
TID=OsAffx.22035.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pollen allergen, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1466011/11Alpha-expansin 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14590Os.872.2.S1_at10/111+8172179..8174691Pathogen-related protein, putative, expressed
LOC_Os01g14610Os.874.1.S1_at11/111+8175701..8179897DNA replication complex GINS protein PSF2, putative, expressed
LOC_Os01g14620OsAffx.2006.1.S1_at11/111+8187070..8187456hypothetical protein
LOC_Os01g14630OsAffx.23247.1.S1_x_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14630OsAffx.23247.1.S1_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14640Os.51423.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14640Os.51423.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14650Os.28773.1.S1_at11/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14650OsAffx.8085.1.S1_x_at1/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14660OsAffx.22035.1.S1_x_at11/111+8198724..8199586Alpha-expansin 4 precursor, putative, expressed
LOC_Os01g14670Os.12851.1.S1_at11/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14670OsAffx.30146.1.S1_s_at1/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14690Os.37966.1.S1_a_at11/111+8209230..8211935expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22035.1.S1_x_at--898--9411Chr01:8199242..8199266 (25 bp)
TCGTGCGGCGCGTGCTACCTCGTCA
LOC_Os01g14660
OsAffx.22035.1.S1_x_at--686--4591Chr01:8199203..8199227 (25 bp)
GCGACGCGGTGGTGCAAGAACGGCA
LOC_Os01g14660
OsAffx.22035.1.S1_x_at--72--2751Chr01:8199188..8199212 (25 bp)
AAGAACGGCACGTCGGTGACCGTGA
LOC_Os01g14660
OsAffx.22035.1.S1_x_at--871--2531Chr01:8199140..8199164 (25 bp)
AACTACAGCGAGTCCGGCGACGCCG
LOC_Os01g14660
OsAffx.22035.1.S1_x_at--741--6211Chr01:8199062..8199086 (25 bp)
GAGGCGATCGCCGTGTACAGCTCCG
LOC_Os01g14660
OsAffx.22035.1.S1_x_at--214--511Chr01:8199035..8199059 (25 bp)
ATCGTCCCCGTCAGGTACGCGCGGA
LOC_Os01g14660
OsAffx.22035.1.S1_x_at--781--1851Chr01:8198965..8198989 (25 bp)
ACGACTACTACGAGCTGGTGCTCGT
LOC_Os01g14660
OsAffx.22035.1.S1_x_at--461--6131Chr01:8198882..8198906 (25 bp)
GAGTGGCTGTCGATGAGCCGGAACT
LOC_Os01g14660
OsAffx.22035.1.S1_x_at--831--891Chr01:8198818..8198842 (25 bp)
AGGCGCTGTCGTTCAGGGTGCAGGC
LOC_Os01g14660
OsAffx.22035.1.S1_x_at--676--6951Chr01:8198769..8198793 (25 bp)
GTACGACGTCGCTCCGGCGAACTGG
LOC_Os01g14660
OsAffx.22035.1.S1_x_at--784--3571Chr01:8198755..8198779 (25 bp)
CGGCGAACTGGCAGTTCGGGTCCAC
LOC_Os01g14660
Target Sequence 
TCGTGCGGCGCGTGCTACCTCGTCACCTGCGACGCCTCGGCGACGCGGTGGTGCAAGAACGGCACGTCGGTGACCGTGAC
GGCGACCAACTACTGCCCGCCCAACTACAGCGAGTCCGGCGACGCCGGCGGGTGGTGCAACCCGCCGCGGCGCCACTTCG
ACATGTCGCAGCCGGCGTGGGAGGCGATCGCCGTGTACAGCTCCGGCATCGTCCCCGTCAGGTACGCGCGGACGCCGTGC
AGGCGCGTCGGCGGCATCCGGTTCGGCATCGCCGGGCACGACTACTACGAGCTGGTGCTCGTCACCAACGTCGCCGGCAG
CGGCGCCGTGGCGGCGGCGTGGGTGAAGGGCTCCGGGACGGAGTGGCTGTCGATGAGCCGGAACTGGGGGGAGAACTGGC
AGAGCAACGCGTACCTCACCGGCCAGGCGCTGTCGTTCAGGGTGCAGGCCGACGACGGCGGCGTCGTCACGGCGTACGAC
GTCGCTCCGGCGAACTGGCAGTTCGGGTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22035.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis