Browse Element(s) Details


OsAffx.22036.1.S1_x_at

Description tigr:9629.m01444
TID=OsAffx.22036.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1464011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14580Os.872.1.S1_at11/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14580Os.54965.1.S1_at1/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14590Os.872.2.S1_at10/111+8172179..8174691Pathogen-related protein, putative, expressed
LOC_Os01g14610Os.874.1.S1_at11/111+8175701..8179897DNA replication complex GINS protein PSF2, putative, expressed
LOC_Os01g14620OsAffx.2006.1.S1_at11/111+8187070..8187456hypothetical protein
LOC_Os01g14630OsAffx.23247.1.S1_x_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14630OsAffx.23247.1.S1_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14640Os.51423.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14640Os.51423.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14650Os.28773.1.S1_at11/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14650OsAffx.8085.1.S1_x_at1/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14660OsAffx.22035.1.S1_x_at11/111+8198724..8199586Alpha-expansin 4 precursor, putative, expressed
LOC_Os01g14670Os.12851.1.S1_at11/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14670OsAffx.30146.1.S1_s_at1/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14690Os.37966.1.S1_a_at11/111+8209230..8211935expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22036.1.S1_x_at--535--1791Chr01:8190457..8190481 (25 bp)
ACCGCTCTCTCGAGGGTCGTCGTGT
LOC_Os01g14640
OsAffx.22036.1.S1_x_at--927--9511Chr01:8190462..8190486 (25 bp)
TCTCTCGAGGGTCGTCGTGTTCTTC
LOC_Os01g14640
OsAffx.22036.1.S1_x_at--763--6131Chr01:8190468..8190492 (25 bp)
GAGGGTCGTCGTGTTCTTCCTGCCG
LOC_Os01g14640
OsAffx.22036.1.S1_x_at--387--9052Chr03:23365649..23365857 (25 bp)
TGCAGGTGTTCGACGGCGCGAACGC
NONE
OsAffx.22036.1.S1_x_at--243--4091Chr01:8190687..8190711 (25 bp)
CGACGCCATGCGTGTGGGCTGCTTC
LOC_Os01g14640
OsAffx.22036.1.S1_x_at--152--611Chr01:8190694..8190718 (25 bp)
ATGCGTGTGGGCTGCTTCCTGCACT
LOC_Os01g14640
OsAffx.22036.1.S1_x_at--447--8671Chr01:8190699..8190723 (25 bp)
TGTGGGCTGCTTCCTGCACTACAGG
LOC_Os01g14640
OsAffx.22036.1.S1_x_at--296--8651Chr01:8190701..8190725 (25 bp)
TGGGCTGCTTCCTGCACTACAGGCC
LOC_Os01g14640
OsAffx.22036.1.S1_x_at--62--7471Chr01:8190886..8190910 (25 bp)
GTGTGGGACAGCTACTTCGGCGGGT
LOC_Os01g14640
OsAffx.22036.1.S1_x_at--1027--8511Chr01:8190919..8190943 (25 bp)
TGGAACTACGTGACGGATGGGCACT
LOC_Os01g14640
OsAffx.22036.1.S1_x_at--1130--9911Chr01:8190925..8190949 (25 bp)
TACGTGACGGATGGGCACTACTACG
LOC_Os01g14640
Target Sequence 
ACCGCTCTCTCGAGGGTCGTCGTGTTCTTCCTGCCGCTCGTGGCGTCCACCTCGCTCTGCTGCGCGGCGGCGTACCTGCT
CGTCGCCGCCTCGGAGCCGGACCAGGAGGGCGCCGCCGGCGCAGCGGCGGCGAAGGAGGTGGTGCTCGTCCGCGGCGACA
GGGCGGAGGTCGGGGTGCTGCAGGTGTTCGACGGCGCGAACGCCACCGTGTACGCCGCCGCCGCCGACGCCGACGCCATG
CGTGTGGGCTGCTTCCTGCACTACAGGCCCCGCGGCGCGGGCGGCGGCGGCGGGTGGACGAAGCGCGGGGTCGACGAGGA
CGGCGAGGAGGTGGTGTTCGCCGGCAGGCTGGCCGCCGTCTGCGGCGGCGACGGCGACGATGTCGAGGAGGAGCTCGCGG
CGCTGCGGGTGGACCGGCTGGCGGAGGGCGTGTGGGACAGCTACTTCGGCGGGTGGTCGAGGTGGAACTACGTGACGGAT
GGGCACTACTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22036.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis