Browse Element(s) Details


Os.872.1.S1_at

Description gb:AK072762.1
DB_XREF= gi:32982785
TID=Os.872.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pathogenesis related protein (P0034C11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139I05, full insert sequence.
FL= gb:AK072762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1458011/11Isocitrate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14530Os.30173.2.S1_x_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.2.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.1.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14540Os.33904.1.S1_at11/111+8149597..8150487Stigma-specific protein, Stig1 containing protein, expressed
LOC_Os01g14550Os.39087.1.S1_at9/111+8156651..8158347Pathogen-related protein, putative, expressed
LOC_Os01g14570NANA1+8160665..8163814transposon protein, putative, unclassified
LOC_Os01g14580Os.872.1.S1_at11/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14580Os.54965.1.S1_at1/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14590Os.872.2.S1_at10/111+8172179..8174691Pathogen-related protein, putative, expressed
LOC_Os01g14610Os.874.1.S1_at11/111+8175701..8179897DNA replication complex GINS protein PSF2, putative, expressed
LOC_Os01g14620OsAffx.2006.1.S1_at11/111+8187070..8187456hypothetical protein
LOC_Os01g14630OsAffx.23247.1.S1_x_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14630OsAffx.23247.1.S1_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14640Os.51423.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14640Os.51423.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14650Os.28773.1.S1_at11/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14650OsAffx.8085.1.S1_x_at1/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004450molecular_functionisocitrate dehydrogenase (NADP+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.872.1.S1_at--499--6311Chr01:8171991..8172015 (25 bp)
GATGACAAAGGATCTAGCTCTTCTT
LOC_Os01g14580
Os.872.1.S1_at--321--10011Chr01:8172005..8172029 (25 bp)
TAGCTCTTCTTGTACATGGGCCAAA
LOC_Os01g14580
Os.872.1.S1_at--563--10491Chr01:8172127..8172151 (25 bp)
TTAACACTGTTGAGTTCATCGATGC
LOC_Os01g14580
Os.872.1.S1_at--300--5391Chr01:8172376..8172400 (25 bp)
GAAGCATTGGTATGCGCAGCTATCA
LOC_Os01g14580
Os.872.1.S1_at--234--2631Chr01:8172400..8172424 (25 bp)
AACCACGGTGCTCTGATAAAATCTG
LOC_Os01g14580
Os.872.1.S1_at--260--10751Chr01:8172494..8172518 (25 bp)
TTGAACTTTTATTCGTCAGACTTCT
LOC_Os01g14580
Os.872.1.S1_at--924--7091Chr01:8172508..8172532 (25 bp)
GTCAGACTTCTACTTATAACTACTT
LOC_Os01g14580
Os.872.1.S1_at--331--9851Chr01:8172540..8172564 (25 bp)
TAAATCATGGCCGTGTAGCTTAGTT
LOC_Os01g14580
Os.872.1.S1_at--1046--3971Chr01:8172551..8172575 (25 bp)
CGTGTAGCTTAGTTCTTCTATGCCA
LOC_Os01g14580
Os.872.1.S1_at--300--10131Chr01:8172592..8172616 (25 bp)
TATCCTAAAGGTACCCACCACAAGT
LOC_Os01g14580
Os.872.1.S1_at--651--7751Chr01:8172617..8172641 (25 bp)
GGTGTTTGTGCTTTGTACCATACAA
LOC_Os01g14580
Target Sequence 
GATGACAAAGGATCTAGCTCTTCTTGTACATGGGCCAAATGTTAGCCGAGATAAGTATCTTAACACTGTTGAGTTCATCG
ATGCTGTTGCTGAGGATTTAAGAACAAGATTGTCAGTAACATCCAAGTTATGAAGGAATGAATAGGGCAACGGCAGGGGA
CATGTTAGGATCCCATGATACAAAGTTTATACATTTTTACTTTGAATAAGAGCGATTGAAGCATTGGTATGCGCAGCTAT
CAACCACGGTGCTCTGATAAAATCTGGTAAAGATTGTATGCATACTCCATACAACAATGGAGGTGGAGGAGGATATTTTG
CTCGAAATAAGAAGTTTGAACTTTTATTCGTCAGACTTCTACTTATAACTACTTTGATGATTAAATCATGGCCGTGTAGC
TTAGTTCTTCTATGCCAAAAGAGCAAGTAGAACTATCCTAAAGGTACCCACCACAAGTGGTGTTTGTGCTTTGTACCATA
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis