Browse Element(s) Details


Os.872.2.S1_at

Description gb:AK059893.1
DB_XREF= gi:32969911
TID=Os.872.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pathogenesis related protein (P0034C11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D11, full insert sequence.
FL= gb:AK059893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1459010/11Pathogen-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14540Os.33904.1.S1_at11/111+8149597..8150487Stigma-specific protein, Stig1 containing protein, expressed
LOC_Os01g14550Os.39087.1.S1_at9/111+8156651..8158347Pathogen-related protein, putative, expressed
LOC_Os01g14570NANA1+8160665..8163814transposon protein, putative, unclassified
LOC_Os01g14580Os.872.1.S1_at11/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14580Os.54965.1.S1_at1/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14590Os.872.2.S1_at10/111+8172179..8174691Pathogen-related protein, putative, expressed
LOC_Os01g14610Os.874.1.S1_at11/111+8175701..8179897DNA replication complex GINS protein PSF2, putative, expressed
LOC_Os01g14620OsAffx.2006.1.S1_at11/111+8187070..8187456hypothetical protein
LOC_Os01g14630OsAffx.23247.1.S1_x_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14630OsAffx.23247.1.S1_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14640Os.51423.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14640Os.51423.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14650Os.28773.1.S1_at11/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14650OsAffx.8085.1.S1_x_at1/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14660OsAffx.22035.1.S1_x_at11/111+8198724..8199586Alpha-expansin 4 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.872.2.S1_at--724--2671Chr01:8173438..8173462 (25 bp)
AAGCGGGTCGAGTTCTTTGGCATCT
LOC_Os01g14590
Os.872.2.S1_at--681--471NONE
ATCTGCATCTTCCATGTCGACGAGG
NONE
Os.872.2.S1_at--361--8031Chr01:8172850..8172874 (25 bp)
GGAGTACTTCTACGAGCGCGGCAAT
LOC_Os01g14590
Os.872.2.S1_at--755--791Chr01:8172731..8172755 (25 bp)
ATGGGTAACCAACACAGCATGTCAC
LOC_Os01g14590
Os.872.2.S1_at--263--751Chr01:8172713..8172737 (25 bp)
ATGTCACCCATTCAAATGTCCTACT
LOC_Os01g14590
Os.872.2.S1_at--1153--7231Chr01:8172696..8172720 (25 bp)
GTCCTACTCCAGATTACCAACAGAT
LOC_Os01g14590
Os.872.2.S1_at--507--471Chr01:8172673..8172697 (25 bp)
ATCTGCACCTGCTTTTTTATTCCAA
LOC_Os01g14590
Os.872.2.S1_at--1026--7931Chr01:8172572..8172596 (25 bp)
GGATAGTTCTACTTGCTCTTTTGGC
LOC_Os01g14590
Os.872.2.S1_at--954--1431Chr01:8172545..8172569 (25 bp)
AGAAGAACTAAGCTACACGGCCATG
LOC_Os01g14590
Os.872.2.S1_at--884--191Chr01:8172462..8172486 (25 bp)
ATTTCGAGCAAAATATCCTCCTCCA
LOC_Os01g14590
Os.872.2.S1_at--801--3431Chr01:8172400..8172424 (25 bp)
CAGATTTTATCAGAGCACCGTGGTT
LOC_Os01g14590
Target Sequence 
AAGCGGGTCGAGTTCTTTGGCATCTGCATCTTCCATGTCGACGAGGAGATGAAGGTGGAGAAGACGGAGTACTTCTACGA
GCGCGGCAATTTCCTCGCGAGCTTCTTGAGCACGCCTGCTGCTGCTGCTGCTGCTGAGGCTGCGTCAGGCTCAGGATGCC
CTGTCATGGGAGGAAACTGAAGCAATGGGTAACCAACACAGCATGTCACCCATTCAAATGTCCTACTCCAGATTACCAAC
AGATCTGCACCTGCTTTTTTATTCCAAGCTATATACTGTAGTAAATAAACAGTCTTGTTTGTATGGTACAAAGCACAAAC
ACCACTTGTGGTGGGTACCTTTAGGATAGTTCTACTTGCTCTTTTGGCATAGAAGAACTAAGCTACACGGCCATGATTTA
ATCATCAAAGTAGTTATAAGTAGAAGTCTGACGAATAAAAGTTCAAACTTCTTATTTCGAGCAAAATATCCTCCTCCACC
TCCATTGTTGTATGGAGTATGCATACAATCTTTACCAGATTTTATCAGAGCACCGTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.872.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis