Browse Element(s) Details


Os.33904.1.S1_at

Description gb:AK073588.1
DB_XREF= gi:32983611
TID=Os.33904.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0004G10.37 (OSJNBa0004G10.37), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050N08, full insert sequence.
FL= gb:AK073588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1454011/11Stigma-specific protein, Stig1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14510Os.35827.1.S1_at10/111+8122474..8124894Protein kinase domain containing protein, expressed
LOC_Os01g14514Os.5216.1.S1_at9/111+8127060..8127824expressed protein
LOC_Os01g14520OsAffx.23246.1.S1_x_at11/111+8129883..8132196C4-dicarboxylate transporter/malic acid transport protein, expressed
LOC_Os01g14520OsAffx.23246.1.S1_at11/111+8129883..8132196C4-dicarboxylate transporter/malic acid transport protein, expressed
LOC_Os01g14530Os.30173.2.S1_x_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.2.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.1.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14540Os.33904.1.S1_at11/111+8149597..8150487Stigma-specific protein, Stig1 containing protein, expressed
LOC_Os01g14550Os.39087.1.S1_at9/111+8156651..8158347Pathogen-related protein, putative, expressed
LOC_Os01g14570NANA1+8160665..8163814transposon protein, putative, unclassified
LOC_Os01g14580Os.872.1.S1_at11/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14580Os.54965.1.S1_at1/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14590Os.872.2.S1_at10/111+8172179..8174691Pathogen-related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33904.1.S1_at--60--5071Chr01:8150108..8150132 (25 bp)
GCAGCTGCAACCACGTCTGCAAGTA
LOC_Os01g14540
Os.33904.1.S1_at--959--3211Chr01:8150089..8150113 (25 bp)
CAAGTACGGCGAGACCTGCTGCGGC
LOC_Os01g14540
Os.33904.1.S1_at--151--1471Chr01:8149997..8150021 (25 bp)
AGAAGTGCAGCTTCGGCCTGTGCGA
LOC_Os01g14540
Os.33904.1.S1_at--1086--4651Chr01:8149918..8149942 (25 bp)
GCGTGTGCATTCATGTACGTGGCGT
LOC_Os01g14540
Os.33904.1.S1_at--608--9931Chr01:8149903..8149927 (25 bp)
TACGTGGCGTGCATGCGATCATCGA
LOC_Os01g14540
Os.33904.1.S1_at--590--9391Chr01:8149857..8149881 (25 bp)
TCGTTCCTACACATCCATCAGAGAA
LOC_Os01g14540
Os.33904.1.S1_at--622--9931Chr01:8149808..8149832 (25 bp)
TACGACGTGAGTGCATACCTATTAT
LOC_Os01g14540
Os.33904.1.S1_at--193--71Chr01:8149757..8149781 (25 bp)
ATTGCAATTGTTGAGCTCCTGAAAC
LOC_Os01g14540
Os.33904.1.S1_at--518--3111Chr01:8149692..8149716 (25 bp)
AATTTAAGGATCTACGGTGCGTCTG
LOC_Os01g14540
Os.33904.1.S1_at--360--9151Chr01:8149675..8149699 (25 bp)
TGCGTCTGTTCGTCTCATTATTTAT
LOC_Os01g14540
Os.33904.1.S1_at--567--7431Chr01:8149650..8149674 (25 bp)
GTGTTTCTTATTATTGTTGGACTAC
LOC_Os01g14540
Target Sequence 
GCAGCTGCAACCACGTCTGCAAGTACGGCGAGACCTGCTGCGGCGGCCACTGCGTCGACCTCCTCAGCGACCGCAAGAAC
TGCGGCGACTGCTTCGTCCGCTGCCCCAGCAAGAAGTGCAGCTTCGGCCTGTGCGACTACGCCGGCTAACCGGCCGGCGA
CCGGCGACGACGGCGGCGGCGGCGGCGGCGGCGTGTGCATTCATGTACGTGGCGTGCATGCGATCATCGAGGCAGGAAAT
GCAATACAAATTCGTTCCTACACATCCATCAGAGAAATAAAAAAAATGGCAGTACGTATATACGACGTGAGTGCATACCT
ATTATATATATACTCCAAATTGTTTTACAAAATTGCAATTGTTGAGCTCCTGAAACAAGTATACATATACGAAAAAAAAA
TGATAAAAGTTATACAAATTTAAGGATCTACGGTGCGTCTGTTCGTCTCATTATTTATGTGTTTCTTATTATTGTTGGAC
TAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis