Browse Element(s) Details


Os.30173.1.S1_at

Description gb:AK109164.1
DB_XREF= gi:32994373
TID=Os.30173.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ABA-induced plasma membrane protein (OSJNBa0004G10.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G11, full insert sequence.
FL= gb:AK109164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1453011/11AWPM-19-like membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14510Os.35827.1.S1_at10/111+8122474..8124894Protein kinase domain containing protein, expressed
LOC_Os01g14514Os.5216.1.S1_at9/111+8127060..8127824expressed protein
LOC_Os01g14520OsAffx.23246.1.S1_x_at11/111+8129883..8132196C4-dicarboxylate transporter/malic acid transport protein, expressed
LOC_Os01g14520OsAffx.23246.1.S1_at11/111+8129883..8132196C4-dicarboxylate transporter/malic acid transport protein, expressed
LOC_Os01g14530Os.30173.2.S1_x_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.2.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.1.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14540Os.33904.1.S1_at11/111+8149597..8150487Stigma-specific protein, Stig1 containing protein, expressed
LOC_Os01g14550Os.39087.1.S1_at9/111+8156651..8158347Pathogen-related protein, putative, expressed
LOC_Os01g14570NANA1+8160665..8163814transposon protein, putative, unclassified
LOC_Os01g14580Os.872.1.S1_at11/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14580Os.54965.1.S1_at1/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30173.1.S1_at--606--3251Chr01:8143632..8143757 (25 bp)
CAACGCGAAGCTGGGAACCATGGAG
LOC_Os01g14530
Os.30173.1.S1_at--539--91Chr01:8143475..8143499 (25 bp)
ATTCGATCGGCGTACGTGCGTGTTG
LOC_Os01g14530
Os.30173.1.S1_at--1104--8811Chr01:8143455..8143479 (25 bp)
TGTTGGATGGATGGGCATCGCCATT
LOC_Os01g14530
Os.30173.1.S1_at--787--8271Chr01:8143442..8143466 (25 bp)
GGCATCGCCATTGTGCAAAGGTGAA
LOC_Os01g14530
Os.30173.1.S1_at--237--7351Chr01:8143422..8143446 (25 bp)
GTGAAGACGCAGACGTACGCACGTA
LOC_Os01g14530
Os.30173.1.S1_at--951--4451Chr01:8143404..8143428 (25 bp)
GCACGTAAGGGCGTAACAAGTATTC
LOC_Os01g14530
Os.30173.1.S1_at--210--9051Chr01:8143367..8143391 (25 bp)
TGCATGCATGCCTGTCACGATTCAC
LOC_Os01g14530
Os.30173.1.S1_at--854--3871Chr01:8143356..8143380 (25 bp)
CTGTCACGATTCACGCGCGAGTTGT
LOC_Os01g14530
Os.30173.1.S1_at--408--4151Chr01:8143341..8143365 (25 bp)
CGCGAGTTGTGGTTTGTGCTTTAAT
LOC_Os01g14530
Os.30173.1.S1_at--148--5591Chr01:8143271..8143295 (25 bp)
GAAATGGTGATGATTCGTTTGTACT
LOC_Os01g14530
Os.30173.1.S1_at--655--6571Chr01:8143260..8143284 (25 bp)
GATTCGTTTGTACTGGAATATTCCT
LOC_Os01g14530
Target Sequence 
CAACGCGAAGCTGGGAACCATGGAGGCGTTCACGATCGTCCTGACGGCGACGCAGCTCTTCTACGTCCTCGCGATCCACA
GCGGGAGCCGCGGCCCCGTCCCGGTGGAGCGGACACACGCCGTGGCGGCCGGCTACTGATCGATCGCCGGCGATTCGATT
CGATCGGCGTACGTGCGTGTTGGATGGATGGGCATCGCCATTGTGCAAAGGTGAAGACGCAGACGTACGCACGTAAGGGC
GTAACAAGTATTCAAACGGGGGCCATGCATGCATGCCTGTCACGATTCACGCGCGAGTTGTGGTTTGTGCTTTAATAATT
TCCTTTTGAAAGTACGATTCTTTGAGTGGAACTGGGGTGATGAAATGGTGATGATTCGTTTGTACTGGAATATTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis