Browse Element(s) Details


OsAffx.23246.1.S1_x_at

Description tigr:9629.m01431
TID=OsAffx.23246.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=C4-dicarboxylate transportermalic acid transport protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1452011/11C4-dicarboxylate transporter/malic acid transport protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14490NANA1+8112357..8117086retrotransposon protein, putative, unclassified
LOC_Os01g14510Os.35827.1.S1_at10/111+8122474..8124894Protein kinase domain containing protein, expressed
LOC_Os01g14514Os.5216.1.S1_at9/111+8127060..8127824expressed protein
LOC_Os01g14520OsAffx.23246.1.S1_x_at11/111+8129883..8132196C4-dicarboxylate transporter/malic acid transport protein, expressed
LOC_Os01g14520OsAffx.23246.1.S1_at11/111+8129883..8132196C4-dicarboxylate transporter/malic acid transport protein, expressed
LOC_Os01g14530Os.30173.2.S1_x_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.2.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.1.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14540Os.33904.1.S1_at11/111+8149597..8150487Stigma-specific protein, Stig1 containing protein, expressed
LOC_Os01g14550Os.39087.1.S1_at9/111+8156651..8158347Pathogen-related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23246.1.S1_x_at--950--8191Chr01:8131640..8131664 (25 bp)
GGAAGTTCCTGTCCATGGTGGCCAA
LOC_Os01g14520
OsAffx.23246.1.S1_x_at--209--3931Chr01:8131613..8131637 (25 bp)
CGGCCAGCCACATCACGGTGATCGG
LOC_Os01g14520
OsAffx.23246.1.S1_x_at--1075--2071Chr01:8131604..8131628 (25 bp)
ACATCACGGTGATCGGGAACCTGGT
LOC_Os01g14520
OsAffx.23246.1.S1_x_at--1014--8751Chr01:8131484..8131508 (25 bp)
TGTACCAGCGGTTCCTCGGCTCCGA
LOC_Os01g14520
OsAffx.23246.1.S1_x_at--805--3811Chr01:8131372..8131396 (25 bp)
CTCCTTCGACACCTGCTGCAAGATG
LOC_Os01g14520
OsAffx.23246.1.S1_x_at--1063--9112Chr11:7405403..7405424 (22 bp)
TGCTGCAAGATGCTCTTCTTCCTCT
NONE
OsAffx.23246.1.S1_x_at--305--2171Chr01:8130110..8130134 (25 bp)
ACACTGTTTAAGAGGGCGATGCGGC
LOC_Os01g14520
OsAffx.23246.1.S1_x_at--47--8631Chr01:8130071..8130095 (25 bp)
TGGTGGGCGTACTCATTCCCGCTAA
LOC_Os01g14520
OsAffx.23246.1.S1_x_at--1075--10631Chr01:8130056..8130080 (25 bp)
TTCCCGCTAACGGTTCTGGCGCTGG
LOC_Os01g14520
OsAffx.23246.1.S1_x_at--1068--4791Chr01:8129946..8129970 (25 bp)
GCTCGCTCTCATGGTATTCACCGTG
LOC_Os01g14520
OsAffx.23246.1.S1_x_at--826--8571Chr01:8129935..8129959 (25 bp)
TGGTATTCACCGTGCTCCGCACCAA
LOC_Os01g14520
Target Sequence 
GGAAGTTCCTGTCCATGGTGGCCAACCCGGCCAGCCACATCACGGTGATCGGGAACCTGGTGACGGCGAGGGCGGCGGCG
AGGATGGGGTGGCACGAGGGCGCCGTCGCCATGTTCGCCGTGGGCGCCGCGCACTACCTCGTGCTGTTCGTCACGCTGTA
CCAGCGGTTCCTCGGCTCCGACTCGCTGCCGGCGATGCTCCGCCCGGTGTTCTTCCTCTTCTTCGCCGCGCCCAGCATGG
CGTCGCTCGCCTGGGACGCCATCTCGGCCTCCTTCGACACCTGCTGCAAGATGCTCTTCTTCCTCTCCCTCTTCCTCTTC
GCCTCCCTGGTGTCGCGGCCGACACTGTTTAAGAGGGCGATGCGGCGGTTCAGTGTGGCGTGGTGGGCGTACTCATTCCC
GCTAACGGTTCTGGCGCTGGCGGCGGCGGAGTACGCGCAGGAGGTGAGGGAGGTGGCGGCGAGCGTGCTCATGCTCGCGC
TCGCCATCCTCTCCGTAGCCGTCACGCTCGCTCTCATGGTATTCACCGTGCTCCGCACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23246.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis