Browse Element(s) Details


OsAffx.23247.1.S1_x_at

Description gb:NM_188788.1
DB_XREF= gi:34904659
GEN=P0034C11.25
TID=OsAffx.23247.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative geranylgeranyl pyrophosphate synthase (P0034C11.25), mRNA.
PROD=putative geranylgeranyl pyrophosphate synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1463011/11Polyprenyl synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14570NANA1+8160665..8163814transposon protein, putative, unclassified
LOC_Os01g14580Os.872.1.S1_at11/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14580Os.54965.1.S1_at1/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14590Os.872.2.S1_at10/111+8172179..8174691Pathogen-related protein, putative, expressed
LOC_Os01g14610Os.874.1.S1_at11/111+8175701..8179897DNA replication complex GINS protein PSF2, putative, expressed
LOC_Os01g14620OsAffx.2006.1.S1_at11/111+8187070..8187456hypothetical protein
LOC_Os01g14630OsAffx.23247.1.S1_x_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14630OsAffx.23247.1.S1_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14640Os.51423.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14640Os.51423.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14650Os.28773.1.S1_at11/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14650OsAffx.8085.1.S1_x_at1/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14660OsAffx.22035.1.S1_x_at11/111+8198724..8199586Alpha-expansin 4 precursor, putative, expressed
LOC_Os01g14670Os.12851.1.S1_at11/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14670OsAffx.30146.1.S1_s_at1/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14690Os.37966.1.S1_a_at11/111+8209230..8211935expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0004311molecular_functionfarnesyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23247.1.S1_x_at--222--2651Chr01:8188491..8188515 (25 bp)
AACCACGTCGCCTTCGGCGAGTTCA
LOC_Os01g14630
OsAffx.23247.1.S1_x_at--542--6711Chr01:8188553..8188577 (25 bp)
GTTCGAGCACGTGGCGCGCGGCTGC
LOC_Os01g14630
OsAffx.23247.1.S1_x_at--638--9671Chr01:8188699..8188723 (25 bp)
TCAGCCTCGCCATGCTGGAGTACAT
LOC_Os01g14630
OsAffx.23247.1.S1_x_at--227--9131Chr01:8188711..8188735 (25 bp)
TGCTGGAGTACATCCACGTGCACAA
LOC_Os01g14630
OsAffx.23247.1.S1_x_at--457--1911Chr01:8188726..8188750 (25 bp)
ACGTGCACAAGACGGCGAGGCTCCT
LOC_Os01g14630
OsAffx.23247.1.S1_x_at--536--8311Chr01:8188837..8188861 (25 bp)
GGCTCCTCTTCCAGGTGGTCGACGA
LOC_Os01g14630
OsAffx.23247.1.S1_x_at--388--5791Chr01:8188857..8188881 (25 bp)
GACGACGTGCTCGACATGACGAGCA
LOC_Os01g14630
OsAffx.23247.1.S1_x_at--354--2111Chr01:8188870..8188894 (25 bp)
ACATGACGAGCACATCGGAGCAGCT
LOC_Os01g14630
OsAffx.23247.1.S1_x_at--518--5111Chr01:8188879..8188903 (25 bp)
GCACATCGGAGCAGCTCGGGAAGAC
LOC_Os01g14630
OsAffx.23247.1.S1_x_at--528--5611Chr01:8188926..8188950 (25 bp)
GACAAGGCCACTTACCCGAAGCTGC
LOC_Os01g14630
OsAffx.23247.1.S1_x_at--299--911Chr01:8189002..8189026 (25 bp)
AGGCGGAGCTCGACGGGTTCGACGC
LOC_Os01g14630
Target Sequence 
AACCACGTCGCCTTCGGCGAGTTCACCGCCCTCCTCGCCGGCGACGCGCTCCACGCCCTCGCGTTCGAGCACGTGGCGCG
CGGCTGCGGCGACCACGGCGTCCCCGCGGACCGCACGCTCCGGGCGGTCGCCGAGCTCGGGAGCGCCTCGGGCACCGGCG
GGGTCGCCGCCGGGCAGGTCGCCGACAAGGAGAGCGAGGGCCTCCCCGTCAGCCTCGCCATGCTGGAGTACATCCACGTG
CACAAGACGGCGAGGCTCCTCGAGGCCGCCGCCGTGTCCGGCGCCATCGTCGGCGGGGGCGCGGACGCCGAGGTGGAGAG
GGTCCGGCGGTACGCGCGCTGCGTCGGGCTCCTCTTCCAGGTGGTCGACGACGTGCTCGACATGACGAGCACATCGGAGC
AGCTCGGGAAGACGGCCGGGAAGGACGTCGAGGCCGACAAGGCCACTTACCCGAAGCTGCTCGGCGTCGACAAGGCCCGC
GAGTACGCCGCCGACCTCCTCGCCATGGCCGAGGCGGAGCTCGACGGGTTCGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23247.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis