Browse Element(s) Details


Os.37966.1.S1_a_at

Description gb:AK061748.1
DB_XREF= gi:32971766
TID=Os.37966.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0034C11.31 (P0034C11.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G04, full insert sequence.
FL= gb:AK061748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1469011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14620OsAffx.2006.1.S1_at11/111+8187070..8187456hypothetical protein
LOC_Os01g14630OsAffx.23247.1.S1_x_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14630OsAffx.23247.1.S1_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14640Os.51423.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14640Os.51423.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14650Os.28773.1.S1_at11/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14650OsAffx.8085.1.S1_x_at1/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14660OsAffx.22035.1.S1_x_at11/111+8198724..8199586Alpha-expansin 4 precursor, putative, expressed
LOC_Os01g14670Os.12851.1.S1_at11/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14670OsAffx.30146.1.S1_s_at1/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14690Os.37966.1.S1_a_at11/111+8209230..8211935expressed protein
LOC_Os01g14700OsAffx.11054.1.S1_at11/111+8226003..8226705hypothetical protein
LOC_Os01g14710OsAffx.23248.1.S1_at11/111+8229735..8230673heavy metal-associated domain containing protein
LOC_Os01g14720Os.34089.1.S1_at11/111+8231427..8232635expressed protein
LOC_Os01g14730Os.40855.2.S1_x_at10/111+8235606..8236518hypothetical protein
LOC_Os01g14730Os.40855.4.S1_x_at3/111+8235606..8236518hypothetical protein
LOC_Os01g14730Os.40855.4.S1_at1/111+8235606..8236518hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37966.1.S1_a_at--963--8991Chr01:8210397..8210421 (25 bp)
TGAAGATAACTCCATGCCCTCAGCT
LOC_Os01g14690
Os.37966.1.S1_a_at--433--111Chr01:8210057..8210081 (25 bp)
ATTCTGCTGACTGGGCTCTGGGAAA
LOC_Os01g14690
Os.37966.1.S1_a_at--586--3171Chr01:8209920..8209944 (25 bp)
CAAGGCGCTGCGAAACCCAAAGGAC
LOC_Os01g14690
Os.37966.1.S1_a_at--429--5831Chr01:8209898..8209922 (25 bp)
GACCTCTTGAGGCACTTAGGCCAAA
LOC_Os01g14690
Os.37966.1.S1_a_at--87--5491Chr01:8209542..8209566 (25 bp)
GAACATCAACTGACCTGCTCAGGGA
LOC_Os01g14690
Os.37966.1.S1_a_at--883--10591Chr01:8209514..8209538 (25 bp)
TTCTGTTGGGAACCTCATGATTCAA
LOC_Os01g14690
Os.37966.1.S1_a_at--1019--2711Chr01:8209490..8209514 (25 bp)
AAGCAGCTCATTGTTCGTGGATCGC
LOC_Os01g14690
Os.37966.1.S1_a_at--1141--6751Chr01:8209395..8209419 (25 bp)
GTTAATTCATCGCACAGCTTACCTA
LOC_Os01g14690
Os.37966.1.S1_a_at--1040--1551Chr01:8209380..8209404 (25 bp)
AGCTTACCTATATCTGTGCCAAATT
LOC_Os01g14690
Os.37966.1.S1_a_at--339--2351Chr01:8209343..8209367 (25 bp)
AAACCATTGTTTGCATACGGCGTTG
LOC_Os01g14690
Os.37966.1.S1_a_at--470--4851Chr01:8209306..8209330 (25 bp)
GCTACGGCCTATTTGTCAATGGATA
LOC_Os01g14690
Target Sequence 
TGAAGATAACTCCATGCCCTCAGCTCAAGAACAGGAATTAGCAATCAAGAAGAAATTTGGAGGACTAATGCCAAAAAAAC
CACCACTCATCTCGAAGGATCATGAACGGGCCTATTTTGATTCTGCTGACTGGGCTCTGGGAAAGTCTGGACAGCAAGGC
GCTGCGAAACCCAAAGGACCTCTTGAGGCACTTAGGCCAAAGTTGCAGCCAACACGACAACAGCAGCAGCGTTCCAGGCG
CTTGATTAACACCTCATCNNNAANNNNGNNNNNNNNNNNNNNNNNTGNNGANGNTNNNNNNNNNNANNNNATGAACATCA
ACTGACCTGCTCAGGGAGTGTTCTGTTGGGAACCTCATGATTCAAAGCAGCTCATTGTTCGTGGATCGCAGGGAAGGATA
TGATGTCTTTGATGTTTCCATAGATATGAAAAGAAATGTTGTATTTTTCAAAGACCGATGTTAATTCATCGCACAGCTTA
CCTATATCTGTGCCAAATTTCAGCATAGACTAAACCATTGTTTGCATACGGCGTTGCACTCCAGTCGTGCTACGGCCTAT
TTGTCAATGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37966.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis