Browse Element(s) Details


Os.28773.1.S1_at

Description gb:AK111100.1
DB_XREF= gi:32996309
TID=Os.28773.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative expansin (P0034C11.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G12, full insert sequence.
FL= gb:AK111100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1465011/11Alpha-expansin 15 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14580Os.872.1.S1_at11/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14580Os.54965.1.S1_at1/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14590Os.872.2.S1_at10/111+8172179..8174691Pathogen-related protein, putative, expressed
LOC_Os01g14610Os.874.1.S1_at11/111+8175701..8179897DNA replication complex GINS protein PSF2, putative, expressed
LOC_Os01g14620OsAffx.2006.1.S1_at11/111+8187070..8187456hypothetical protein
LOC_Os01g14630OsAffx.23247.1.S1_x_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14630OsAffx.23247.1.S1_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14640Os.51423.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14640Os.51423.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14650Os.28773.1.S1_at11/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14650OsAffx.8085.1.S1_x_at1/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14660OsAffx.22035.1.S1_x_at11/111+8198724..8199586Alpha-expansin 4 precursor, putative, expressed
LOC_Os01g14670Os.12851.1.S1_at11/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14670OsAffx.30146.1.S1_s_at1/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14690Os.37966.1.S1_a_at11/111+8209230..8211935expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28773.1.S1_at--383--7491Chr01:8193352..8193376 (25 bp)
GTGGGAGACGATCGCGGTGTACCGC
LOC_Os01g14650
Os.28773.1.S1_at--294--7971Chr01:8193323..8193347 (25 bp)
GGATCGTGCCCGTGAACTACCGCCG
LOC_Os01g14650
Os.28773.1.S1_at--513--9251Chr01:8193009..8193033 (25 bp)
TCCTCGGCTCAGTTCTACTGATGAG
LOC_Os01g14650
Os.28773.1.S1_at--411--6731Chr01:8192998..8193022 (25 bp)
GTTCTACTGATGAGCATTAATTGCA
LOC_Os01g14650
Os.28773.1.S1_at--509--4951Chr01:8192985..8193009 (25 bp)
GCATTAATTGCAAGCCTATCTCATT
LOC_Os01g14650
Os.28773.1.S1_at--1073--5151Chr01:8192976..8193000 (25 bp)
GCAAGCCTATCTCATTTAATTAATC
LOC_Os01g14650
Os.28773.1.S1_at--1037--3132Chr01:16405551..16405704 (25 bp)
AATTAATCTGGACCGTTCGATGTAG
NONE
Os.28773.1.S1_at--129--8091Chr01:8192950..8192974 (25 bp)
GGACCGTTCGATGTAGTATATTGTA
LOC_Os01g14650
Os.28773.1.S1_at--1072--6871Chr01:8192935..8192959 (25 bp)
GTATATTGTATGCTTTGATCGACGT
LOC_Os01g14650
Os.28773.1.S1_at--2--4891Chr01:8192924..8192948 (25 bp)
GCTTTGATCGACGTGGCATAGGATG
LOC_Os01g14650
Os.28773.1.S1_at--870--5351Chr01:8192899..8192923 (25 bp)
GAAGAGGCCGCCCACGAAGAAAATT
LOC_Os01g14650
Target Sequence 
GTGGGAGACGATCGCGGTGTACCGCGCCGGGATCGTGCCCGTGAACTACCGCCGCGTGCCGTGCCAGCGGAGCGGCGGCA
TCCGGTTCGCCNTGAACGGGCACAGCTACTNCGAGCTGGTGCTGGTGACGAACGTCGGCGGCAGCGGCGCGGTGGCGCAG
ATGTGGATCAAGGGGTCCGGGACGGGGTGGATGGCGATGAGCCGCAACTGGGGCGCGAACTGGCAGAGCAACGCGCGCCT
CGACGGGCAGGCGCTGTCGTTCCGGGTGCAGGCCGACGACGGCCGCGTCGTCACGGCGGCCGACGTCGCGCCGGCGGGGT
GGTCGTTCGGCGCCACCTACACCTCCTCGGCTCAGTTCTACTGATGAGCATTAATTGCAAGCCTATCTCATTTAATTAAT
CTGGACCGTTCGATGTAGTATATTGTATGCTTTGATCGACGTGGCATAGGATGGAAGAGGCCGCCCACGAAGAAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis