Browse Element(s) Details


Os.874.1.S1_at

Description gb:AK100824.1
DB_XREF= gi:32986033
TID=Os.874.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0034C11.24 (P0034C11.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023122J02, full insert sequence.
FL= gb:AK100824.1 gb:AK061039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1461011/11DNA replication complex GINS protein PSF2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14550Os.39087.1.S1_at9/111+8156651..8158347Pathogen-related protein, putative, expressed
LOC_Os01g14570NANA1+8160665..8163814transposon protein, putative, unclassified
LOC_Os01g14580Os.872.1.S1_at11/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14580Os.54965.1.S1_at1/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14590Os.872.2.S1_at10/111+8172179..8174691Pathogen-related protein, putative, expressed
LOC_Os01g14610Os.874.1.S1_at11/111+8175701..8179897DNA replication complex GINS protein PSF2, putative, expressed
LOC_Os01g14620OsAffx.2006.1.S1_at11/111+8187070..8187456hypothetical protein
LOC_Os01g14630OsAffx.23247.1.S1_x_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14630OsAffx.23247.1.S1_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14640Os.51423.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14640Os.51423.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14650Os.28773.1.S1_at11/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14650OsAffx.8085.1.S1_x_at1/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14660OsAffx.22035.1.S1_x_at11/111+8198724..8199586Alpha-expansin 4 precursor, putative, expressed
LOC_Os01g14670Os.12851.1.S1_at11/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14670OsAffx.30146.1.S1_s_at1/111+8200632..8203771Nectarin-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.874.1.S1_at--520--2411Chr01:8176527..8176551 (25 bp)
AAAAATCTCTCTGCAATGGAAGTGA
LOC_Os01g14610
Os.874.1.S1_at--1031--8191Chr01:8176510..8176534 (25 bp)
GGAAGTGAATATCGTGCGTCCTTTC
LOC_Os01g14610
Os.874.1.S1_at--147--7311Chr01:8176497..8176521 (25 bp)
GTGCGTCCTTTCATGGTGAGAACTT
LOC_Os01g14610
Os.874.1.S1_at--608--4991Chr01:8176456..8176480 (25 bp)
GCATGATAGCCCACAGATGATTCAG
LOC_Os01g14610
Os.874.1.S1_at--653--7851Chr01:8176416..8176440 (25 bp)
GGTAGCAGACCAACACCAGTTACAG
LOC_Os01g14610
Os.874.1.S1_at--527--5011Chr01:8176092..8176116 (25 bp)
GCAGGATGTGTATCTATCCCTTGAA
LOC_Os01g14610
Os.874.1.S1_at--600--8851Chr01:8176027..8176051 (25 bp)
TGATCTGTATCTCACTAGCTAGAAG
LOC_Os01g14610
Os.874.1.S1_at--175--10011Chr01:8176012..8176036 (25 bp)
TAGCTAGAAGCCAACTGCGTTTCCC
LOC_Os01g14610
Os.874.1.S1_at--272--4631Chr01:8175996..8176020 (25 bp)
GCGTTTCCCCAATTTGTTGTGTGTG
LOC_Os01g14610
Os.874.1.S1_at--1003--8491Chr01:8175821..8175845 (25 bp)
TGGCATAACCTAAATTTCCTGACTT
LOC_Os01g14610
Os.874.1.S1_at--1147--1291Chr01:8175748..8175772 (25 bp)
AGATGCTCTCCTTTTGTGATTTATA
LOC_Os01g14610
Target Sequence 
AAAAATCTCTCTGCAATGGAAGTGAATATCGTGCGTCCTTTCATGGTGAGAACTTTACAAGCATTCTATAAGCATGATAG
CCCACAGATGATTCAGCAGGCAGATAACACAGGTAGCAGACCAACACCAGTTACAGACCGTGGTCCAAGAAGAGATCTAA
GGCGCAGGTAACAAGCAGGATGTGTATCTATCCCTTGAAAATTTTACTGTGTGTAGATTGCAGTAAATGAAGGTACTTGT
GATCTGTATCTCACTAGCTAGAAGCCAACTGCGTTTCCCCAATTTGTTGTGTGTGTACCAAAATTTTATAGGACTAATAA
CATTTGACATGGTTTTGTTTTTGAAGAAGCGAAGATAGTAAGATACATCAATTATCTGTCACAAAAGGGAGATTCCTCAT
GTATTCTGGATGGATGTAACTTATGTGATGTATTTTTACTATTTCTGGCATAACCTAAATTTCCTGACTTTATTCGAGTT
ATGATTTCATTTTATGCTTGCTATTTTTTTATCTTTTTAGATGCTCTCCTTTTGTGATTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis