Browse Element(s) Details


Os.38074.1.S1_at

Description gb:CF328719
DB_XREF= gi:33805676
DB_XREF=NACL--03-M02.g1
CLONE=NACL--03-M02
TID=Os.38074.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g147907/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14760OsAffx.23249.1.S1_at11/111+8244542..8245306hypothetical protein
LOC_Os01g14770OsAffx.22233.5.S1_x_at11/111+8256318..8258315expressed protein
LOC_Os01g14780NANA1+8264713..8266071hypothetical protein
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38074.1.S1_at--223--3051NONE
AATCGATTGCCAGAGACTGTCGATA
NONE
Os.38074.1.S1_at--553--9391NONE
TCGATTGCCAGAGACTGTCGATACT
NONE
Os.38074.1.S1_at--478--6591NONE
GATTGCCAGAGACTGTCGATACTGA
NONE
Os.38074.1.S1_at--284--10691NONE
TTGCCAGAGACTGTCGATACTGAAA
NONE
Os.38074.1.S1_at--525--4411Chr01:8268421..8268440 (20 bp)
GCCAGAGACTGTCGATACTGAAATT
LOC_Os01g14790
Os.38074.1.S1_at--503--1351Chr01:8268421..8268443 (23 bp)
AGAGACTGTCGATACTGAAATTCCA
LOC_Os01g14790
Os.38074.1.S1_at--705--5971Chr01:8268421..8268444 (24 bp)
GAGACTGTCGATACTGAAATTCCAA
LOC_Os01g14790
Os.38074.1.S1_at--401--5731Chr01:8268422..8268446 (25 bp)
GACTGTCGATACTGAAATTCCAAAA
LOC_Os01g14790
Os.38074.1.S1_at--480--7211Chr01:8268426..8268450 (25 bp)
GTCGATACTGAAATTCCAAAACTAA
LOC_Os01g14790
Os.38074.1.S1_at--1060--8912Chr01:8268431..8268455 (25 bp)
TACTGAAATTCCAAAACTAATTCCA
LOC_Os01g14790
Os.38074.1.S1_at--307--1331Chr01:8268461..8268820 (25 bp)
AGAGTTAGGTTTTCTTACTGCTGGC
LOC_Os01g14790
Target Sequence 
AATCGATTGCCAGAGACTGTCGATACTGAAATTCCAAAACTAATTCCAAAAGAAGAGTTAGGTTTTCTTACTGCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis