Browse Element(s) Details


Os.307.1.S1_at

Description gb:AK108417.1
DB_XREF= gi:32993626
TID=Os.307.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H09, full insert sequence.
FL= gb:AK108417.1 gb:AK063298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1484011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein
LOC_Os01g14850Os.9962.1.S1_s_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_x_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_s_at9/111+8302510..8303347expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.307.1.S1_at--495--7311Chr01:8297659..8297683 (25 bp)
GTGCTGTTGACAGTAGCTCGTCGTC
LOC_Os01g14840
Os.307.1.S1_at--1131--4931Chr01:8297695..8297719 (25 bp)
GCATTGCAGCTGTAGGCCATGGGTT
LOC_Os01g14840
Os.307.1.S1_at--383--2871Chr01:8297729..8297753 (25 bp)
AAGTGATTCATCTCGGGTGCCATTG
LOC_Os01g14840
Os.307.1.S1_at--769--2711Chr01:8297762..8297786 (25 bp)
AAGCATTTCTTCTAGTTCTGGGCAA
LOC_Os01g14840
Os.307.1.S1_at--641--9891Chr01:8297824..8297848 (25 bp)
TACTTCAGCAAGCATGTGTTCCTCC
LOC_Os01g14840
Os.307.1.S1_at--326--9311Chr01:8297853..8297877 (25 bp)
TCCCGTCAGGAGGTCCATGATGCTA
LOC_Os01g14840
Os.307.1.S1_at--682--6071Chr01:8297878..8297902 (25 bp)
GAGTAGGTTCTGTCCTTCAAGAAGC
LOC_Os01g14840
Os.307.1.S1_at--308--8211Chr01:8297932..8297956 (25 bp)
GGAAGGCACCAGCACATAGTCAGAG
LOC_Os01g14840
Os.307.1.S1_at--799--1511Chr01:8297986..8298010 (25 bp)
AGCAGTTTCGTCCTTTATCAGTTAC
LOC_Os01g14840
Os.307.1.S1_at--303--6891Chr01:8298072..8298096 (25 bp)
GTATCTGGGCTTGCACAATACAGCA
LOC_Os01g14840
Os.307.1.S1_at--309--8791Chr01:8298122..8298146 (25 bp)
TGTTCAGCCTCAGTTCCTAAAAAAT
LOC_Os01g14840
Target Sequence 
GTGCTGTTGACAGTAGCTCGTCGTCCATGCAAAATGGCATTGCAGCTGTAGGCCATGGGTTGGGAGGTCAAAGTGATTCA
TCTCGGGTGCCATTGCAATCATTAAGCATTTCTTCTAGTTCTGGGCAATCATCAGAAACAAGACAAAGCTTTGCGAGAAA
TCGGGTACTTCAGCAAGCATGTGTTCCTCCTCTTTCCCGTCAGGAGGTCCATGATGCTAGAGTAGGTTCTGTCCTTCAAG
AAGCTTCATTCCCTTCCCTACCAGCACAATCAAGGAAGGCACCAGCACATAGTCAGAGCTCAAGGACTGCAGCAAGGATT
GGGGACCAGCAGTTTCGTCCTTTATCAGTTACTAGTAACAGGAATGTTGCTTTAGCACAGCAGGGTACAAGAACATTACC
TGAAAACACCCATGTATCTGGGCTTGCACAATACAGCAAGAGAACTGAGAACATGCACCAAGCTGTTCAGCCTCAGTTCC
TAAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis