Browse Element(s) Details


OsAffx.11057.2.S1_at

Description tigr:9629.m01469
TID=OsAffx.11057.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1489011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14860Os.9955.1.S1_a_at11/111+8326506..8330779Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os01g14870Os.5217.1.S1_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14870OsAffx.23250.2.S1_x_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14880Os.57.1.S1_at5/111+8335984..8336226hypothetical protein
LOC_Os01g14890OsAffx.11057.2.S1_at11/111+8340563..8342544hypothetical protein
LOC_Os01g14890OsAffx.11057.1.S1_x_at10/111+8340563..8342544hypothetical protein
LOC_Os01g14890Os.2500.1.S1_at1/111+8340563..8342544hypothetical protein
LOC_Os01g14900OsAffx.30743.1.S1_x_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14900OsAffx.30743.1.S1_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14910OsAffx.10033.1.S1_at6/111+8351258..8351842hypothetical protein
LOC_Os01g14920Os.32339.1.S1_at11/111+8355819..8359072zinc knuckle family protein, putative, expressed
LOC_Os01g14926OsAffx.23251.1.S1_x_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14926Os.34371.1.S1_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11057.2.S1_at--456--7231Chr01:8341831..8341855 (25 bp)
GTCGCTAGTGTTCGTCCATGTCCAT
LOC_Os01g14890
OsAffx.11057.2.S1_at--594--10071Chr01:8341836..8341860 (25 bp)
TAGTGTTCGTCCATGTCCATGCTGT
LOC_Os01g14890
OsAffx.11057.2.S1_at--603--7271Chr01:8341844..8341868 (25 bp)
GTCCATGTCCATGCTGTGTGCACAT
LOC_Os01g14890
OsAffx.11057.2.S1_at--345--771Chr01:8341848..8341872 (25 bp)
ATGTCCATGCTGTGTGCACATCTTC
LOC_Os01g14890
OsAffx.11057.2.S1_at--1106--611Chr01:8341854..8341878 (25 bp)
ATGCTGTGTGCACATCTTCGCCACC
LOC_Os01g14890
OsAffx.11057.2.S1_at--671--4411Chr01:8341873..8341897 (25 bp)
GCCACCACTGATGATTCGTTTCTCT
LOC_Os01g14890
OsAffx.11057.2.S1_at--658--6571Chr01:8341885..8341948 (25 bp)
GATTCGTTTCTCTGGTTCCTGGCGG
LOC_Os01g14890
OsAffx.11057.2.S1_at--317--4031Chr01:8341889..8341952 (25 bp)
CGTTTCTCTGGTTCCTGGCGGTGTT
LOC_Os01g14890
OsAffx.11057.2.S1_at--705--4611Chr01:8342307..8342331 (25 bp)
GCGAGGTAAAGAACACCCGCATCTT
LOC_Os01g14890
OsAffx.11057.2.S1_at--68--1031Chr01:8342310..8342334 (25 bp)
AGGTAAAGAACACCCGCATCTTCTC
LOC_Os01g14890
OsAffx.11057.2.S1_at--218--4951Chr01:8342325..8342349 (25 bp)
GCATCTTCTCACTCCCTGAAGCGGC
LOC_Os01g14890
Target Sequence 
GTCGCTAGTGTTCGTCCATGTCCATGCTGTGTGCACATCTTCGCCACCACTGATGATTCGTTTCTCTGGTTCCTGGCGGT
GTTCATCGAGGCGAGCGCGGAGATGTACAGGGCGGGGGTGCCCAGCAACGTGGAGGCGTACGTGCTGTTCGCCGGCGCCG
AGCTCGCGTGGCTGCTCCTCGACGGCACCTGGCTGGGCTTCGCCGTCGCGTGCCTCGTCGGCACCGCCTGCCCCCTCGCC
GAGATCCCACTGATCAAGTTGTTCGACTGCTGGAGCTACCCCAACGCCGACGTCCAGCTTCTTGGCGAGGTAAAGAACAC
CCGCATCTTCTCACTCCCTGAAGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11057.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis