Browse Element(s) Details


OsAffx.23251.1.S1_x_at

Description tigr:9629.m01474
TID=OsAffx.23251.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1492611/11protein kinase family protein, putative, expressed
LOC_Os03g032801/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14880Os.57.1.S1_at5/111+8335984..8336226hypothetical protein
LOC_Os01g14890OsAffx.11057.2.S1_at11/111+8340563..8342544hypothetical protein
LOC_Os01g14890OsAffx.11057.1.S1_x_at10/111+8340563..8342544hypothetical protein
LOC_Os01g14890Os.2500.1.S1_at1/111+8340563..8342544hypothetical protein
LOC_Os01g14900OsAffx.30743.1.S1_x_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14900OsAffx.30743.1.S1_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14910OsAffx.10033.1.S1_at6/111+8351258..8351842hypothetical protein
LOC_Os01g14920Os.32339.1.S1_at11/111+8355819..8359072zinc knuckle family protein, putative, expressed
LOC_Os01g14926OsAffx.23251.1.S1_x_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14926Os.34371.1.S1_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14940OsAffx.23252.1.S1_at11/111+8376855..8377388pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g14950Os.3405.1.S1_at11/111+8378917..8384036Importin alpha-1b subunit, putative, expressed
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23251.1.S1_x_at--33--8271Chr01:8361579..8361603 (25 bp)
GGCAGCAGCTCACCGACAAGTCCGA
LOC_Os01g14926
OsAffx.23251.1.S1_x_at--35--9432Chr03:1386570..1387015 (25 bp)
TCGTGCTGTTCGAGGTGCTCATGGC
LOC_Os03g03280
OsAffx.23251.1.S1_x_at--468--411Chr01:8361406..8361430 (25 bp)
ATCAGGGACCAGATCGCGCCCGAGT
LOC_Os01g14926
OsAffx.23251.1.S1_x_at--85--4391Chr01:8361376..8361400 (25 bp)
GCCAAGTTCGCCGACACGGCGGAGA
LOC_Os01g14926
OsAffx.23251.1.S1_x_at--145--5971Chr01:8361355..8361379 (25 bp)
GAGAAGTGCCTCTCCGAGAACGGCA
LOC_Os01g14926
OsAffx.23251.1.S1_x_at--869--3371Chr01:8361320..8361344 (25 bp)
CACCATGGGCGACGTGCTCTGGAAC
LOC_Os01g14926
OsAffx.23251.1.S1_x_at--945--8171Chr01:8361300..8361324 (25 bp)
GGAACCTCGAGAGCGCGATGCACTT
LOC_Os01g14926
OsAffx.23251.1.S1_x_at--172--6331Chr01:8361284..8361308 (25 bp)
GATGCACTTCCAGGACGCGTTCGAC
LOC_Os01g14926
OsAffx.23251.1.S1_x_at--987--1851Chr01:8361198..8361222 (25 bp)
ACGACGGGAGCACGGCCAGCATCAA
LOC_Os01g14926
OsAffx.23251.1.S1_x_at--1065--1851Chr01:8361141..8361165 (25 bp)
ACGAGCCGTGCGTCGACGTTGTCTT
LOC_Os01g14926
OsAffx.23251.1.S1_x_at--455--5751Chr01:8361127..8361151 (25 bp)
GACGTTGTCTTGGAGCCCGACGACG
LOC_Os01g14926
Target Sequence 
GGCAGCAGCTCACCGACAAGTCCGACGTCTACTCCTTCGGCGTCGTGCTGTTCGAGGTGCTCATGGCGCGCCCGGCGCTC
GACCCGGCGCTGCCGCGCGACCAGGTCAGCCTCGCCGACTACGCGCTCGCCTGCAAGCGCGGCGGCGCGCTGCCGGACGT
CGTCGACCCGGCGATCAGGGACCAGATCGCGCCCGAGTGCCTCGCCAAGTTCGCCGACACGGCGGAGAAGTGCCTCTCCG
AGAACGGCACCGAGCGCCCCACCATGGGCGACGTGCTCTGGAACCTCGAGAGCGCGATGCACTTCCAGGACGCGTTCGAC
GCCGCCGCCGGCCGCCCCGTCCCCGCGCTCGACGCCGCCGCCGGCAGCAGCAGCCACCTCGACGACGGGAGCACGGCCAG
CATCAACACGCTGGCCACGTCGTCCACGTCGCACCCGCACGAGCCGTGCGTCGACGTTGTCTTGGAGCCCGACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23251.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis