Browse Element(s) Details


Os.30390.1.S1_at

Description gb:AK108904.1
DB_XREF= gi:32994113
TID=Os.30390.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-F09, full insert sequence.
FL= gb:AK108904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1496011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14926OsAffx.23251.1.S1_x_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14926Os.34371.1.S1_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14940OsAffx.23252.1.S1_at11/111+8376855..8377388pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g14950Os.3405.1.S1_at11/111+8378917..8384036Importin alpha-1b subunit, putative, expressed
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein
LOC_Os01g14970OsAffx.11058.1.S1_x_at11/111+8391321..8392277hypothetical protein
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15010Os.10633.1.S1_at11/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.23253.1.S1_at9/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.7494.1.S1_at1/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30390.1.S1_at--1109--9271Chr01:8384962..8384986 (25 bp)
TCCGGCCACGTCAGCGACTGGAGGA
LOC_Os01g14960
Os.30390.1.S1_at--648--7611Chr01:8384888..8384912 (25 bp)
GGGAATCCTGGGACTCATCACCGTC
LOC_Os01g14960
Os.30390.1.S1_at--275--7191Chr01:8384860..8384884 (25 bp)
GTCGGCTTCGTCGTCTACGTCACGG
LOC_Os01g14960
Os.30390.1.S1_at--208--7311Chr01:8384624..8384648 (25 bp)
GTGCGTCACCAAGCAGTGCGCTGAT
LOC_Os01g14960
Os.30390.1.S1_at--518--1531Chr01:8384613..8384637 (25 bp)
AGCAGTGCGCTGATGCAGTTTGAAA
LOC_Os01g14960
Os.30390.1.S1_at--1129--9811Chr01:8384547..8384571 (25 bp)
TAAAAGGCATCTACTCTTTTCCGCG
LOC_Os01g14960
Os.30390.1.S1_at--334--10391Chr01:8384531..8384555 (25 bp)
TTTTCCGCGTAACATGTTCTTTCGT
LOC_Os01g14960
Os.30390.1.S1_at--708--2111Chr01:8384520..8384544 (25 bp)
ACATGTTCTTTCGTGATTTGCTATA
LOC_Os01g14960
Os.30390.1.S1_at--530--211Chr01:8384474..8384498 (25 bp)
ATTTGCTTGTATGTCACACCATTTG
LOC_Os01g14960
Os.30390.1.S1_at--153--7091Chr01:8384462..8384486 (25 bp)
GTCACACCATTTGTTTTTAGCACAA
LOC_Os01g14960
Os.30390.1.S1_at--575--5111Chr01:8384418..8384442 (25 bp)
GCACTTGATTCGTGATTACATCTCA
LOC_Os01g14960
Target Sequence 
TCCGGCCACGTCAGCGACTGGAGGAAGCCGCGGGCGGTGTGCCACCGGGTGCGCCCGGGGGTGTTCGCGGCGGCGGGAAT
CCTGGGACTCATCACCGTCGTCGTCGGCTTCGTCGTCTACGTCACGGCCCTGCAGACGAACAAGCTGCGGGCGCAGCACC
CCGTCGGCGGCTACTACGTCGGCCACGGCGCCCCNCACCCGGGCATGCCGCCGCCGCCGATGCCGTACGGCCCGCACCCG
CACCCACACCAGCCGCCGCCGCCGGCAGCGGCGGCGACAGCGCCAAGCGCGCCGGAGATCACGCCGGCCGCTTGCCAGGT
CCAGCCAAGCCGAGCGGCGTGCGTCACCAAGCAGTGCGCTGATGCAGTTTGAAACGAGTAGAAGAATTTGGAGATTAAGC
AGAGACGGTGATGTTTAAAAGGCATCTACTCTTTTCCGCGTAACATGTTCTTTCGTGATTTGCTATATTAGAGCATTTGA
TTTGAGTTATTTGCTTGTATGTCACACCATTTGTTTTTAGCACAAACATGATTTGAATTGTAAAGCACTTGATTCGTGAT
TACATCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis