Browse Element(s) Details


Os.10633.1.S1_at

Description gb:AK111904.1
DB_XREF= gi:37988567
TID=Os.10633.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112F13, full insert sequence.
FL= gb:AK111904.1 gb:AK111979.1 gb:AK119548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1501011/11GTP-binding protein SAR1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein
LOC_Os01g14970OsAffx.11058.1.S1_x_at11/111+8391321..8392277hypothetical protein
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15010Os.10633.1.S1_at11/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.23253.1.S1_at9/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.7494.1.S1_at1/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15020Os.46044.1.S1_s_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15020Os.46044.2.S1_x_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048221biological_processrough ER to cis-Golgi vesicle-mediated transport
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005783cellular_componentendoplasmic reticulum
GO:0005829cellular_componentcytosol
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10633.1.S1_at--564--4911Chr01:8411041..8411065 (25 bp)
GCTTCTGCTCCTCAATTGTCAATAG
LOC_Os01g15010
Os.10633.1.S1_at--257--9111Chr01:8411009..8411033 (25 bp)
TGCTCCTGCTGTCCACAGTGGGAGT
LOC_Os01g15010
Os.10633.1.S1_at--556--1091Chr01:8410987..8411011 (25 bp)
AGTGGGTAATTCAGGCCTCTGGTTC
LOC_Os01g15010
Os.10633.1.S1_at--180--891Chr01:8410975..8410999 (25 bp)
AGGCCTCTGGTTCTGTTTATCAACT
LOC_Os01g15010
Os.10633.1.S1_at--612--6811Chr01:8410961..8410985 (25 bp)
GTTTATCAACTCTCCTGATGCTTTG
LOC_Os01g15010
Os.10633.1.S1_at--1104--4871Chr01:8410942..8410966 (25 bp)
GCTTTGGAGAAACCTACTGCACCTG
LOC_Os01g15010
Os.10633.1.S1_at--706--7351Chr01:8410886..8410910 (25 bp)
GTGAATGCCTGTAAGTTGGTGTTAA
LOC_Os01g15010
Os.10633.1.S1_at--1069--10091Chr01:8410824..8410848 (25 bp)
TATGGGTGGTGTGACCTTATTAGCT
LOC_Os01g15010
Os.10633.1.S1_at--980--7671Chr01:8410790..8410814 (25 bp)
GGGTTGCTGGAATCGTTTCTTGACA
LOC_Os01g15010
Os.10633.1.S1_at--755--2991Chr01:8410759..8410783 (25 bp)
AATGTTTCAGCCAATGTATTCACGC
LOC_Os01g15010
Os.10633.1.S1_at--696--6871Chr01:8410744..8410768 (25 bp)
GTATTCACGCTATCTATCTAGCCAG
LOC_Os01g15010
Target Sequence 
GCTTCTGCTCCTCAATTGTCAATAGCAGCTGCTGCTCCTGCTGTCCACAGTGGGAGTGGGTAATTCAGGCCTCTGGTTCT
GTTTATCAACTCTCCTGATGCTTTGGAGAAACCTACTGCACCTGTAAGGAAAAAAGTTTGTCGTAGTGGTGGATAGTGAA
TGCCTGTAAGTTGGTGTTAATACTAGAAATATGACGGGGTTTATTTGTTTGATTGTTTATGGGTGGTGTGACCTTATTAG
CTAGAAAATGTGGGTTGCTGGAATCGTTTCTTGACAACAGGAAATGTTTCAGCCAATGTATTCACGCTATCTATCTAGCC
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis