Browse Element(s) Details


Os.46044.1.S1_s_at

Description gb:AK111762.1
DB_XREF= gi:37988425
TID=Os.46044.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061P18, full insert sequence.
FL= gb:AK111762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1502011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15010Os.10633.1.S1_at11/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.23253.1.S1_at9/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.7494.1.S1_at1/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15020Os.46044.1.S1_s_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15020Os.46044.2.S1_x_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15039OsAffx.23254.1.S1_x_at11/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039OsAffx.23254.1.S1_at11/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039Os.7348.2.S1_x_at1/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039Os.54835.1.S1_s_at1/111+8444563..8448291pectinesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46044.1.S1_s_at--739--7351Chr01:8418360..8418384 (25 bp)
GTGATTGAACCCTTGGAGTCCGAAG
LOC_Os01g15020
Os.46044.1.S1_s_at--50--8271Chr01:8418291..8418315 (25 bp)
GGCAGGACGTCAACATCATCAGCAA
LOC_Os01g15020
Os.46044.1.S1_s_at--682--1491Chr01:8418271..8418295 (25 bp)
AGCAACTAGCAACCCAGCTGCAGAC
LOC_Os01g15020
Os.46044.1.S1_s_at--924--4351Chr01:8418258..8418282 (25 bp)
CCAGCTGCAGACCAAATCCAAAGAT
LOC_Os01g15020
Os.46044.1.S1_s_at--609--4371Chr01:8418241..8418265 (25 bp)
CCAAAGATAGACGTGCATGCCGGTT
LOC_Os01g15020
Os.46044.1.S1_s_at--1141--571Chr01:8418225..8418249 (25 bp)
ATGCCGGTTGGATCTTCACTGTAAA
LOC_Os01g15020
Os.46044.1.S1_s_at--1066--7951Chr01:8418216..8418240 (25 bp)
GGATCTTCACTGTAAAGCTTTTCTA
LOC_Os01g15020
Os.46044.1.S1_s_at--488--1251Chr01:8418201..8418225 (25 bp)
AGCTTTTCTAATCTTTTACATTGAC
LOC_Os01g15020
Os.46044.1.S1_s_at--534--7371Chr01:8418160..8418184 (25 bp)
GTGACTAGGCTATTGTTGCATTTGT
LOC_Os01g15020
Os.46044.1.S1_s_at--505--831Chr01:8418113..8418137 (25 bp)
ATGGAATCGTAAGATCAGGTGTGCT
LOC_Os01g15020
Os.46044.1.S1_s_at--1060--4371Chr01:8417915..8417939 (25 bp)
CCAACTGTTGTGGTGGTTCGGACAT
LOC_Os01g15020
Target Sequence 
GTGATTGAACCCTTGGAGTCCGAAGGGAAGTGGGGAACGACGCCTCCCACGGAAAACGGGGTGCCCAATGGCAGGACGTC
AACATCATCAGCAACTAGCAACCCAGCTGCAGACCAAATCCAAAGATAGACGTGCATGCCGGTTGGATCTTCACTGTAAA
GCTTTTCTAATCTTTTACATTGACTTGTTTGTATGTTGATGTGACTAGGCTATTGTTGCATTTGTTGGAAAAGCAAACAG
AAAAAAAATGGAATCGTAAGATCAGGTGTGCTTGTAACTTGTCGGATGTTTGCCCTAGTTATGAAAAGGTTATCTTGTAA
TAGGGATAGTCCATAAAATTAGGTTTTCTCAGTATAACTGGGACGTCGGATGCTGTAGTTATCTTTGCTTAGATGCTTTT
CAAGCTATACATAGTTTTTCCTTCCTTCATGTTCATTTTTTTTCCCCAACTGTTGTGGTGGTTCGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46044.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis