Browse Element(s) Details


Os.46044.2.S1_x_at

Description gb:AK111583.1
DB_XREF= gi:37988246
TID=Os.46044.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090J18, full insert sequence.
FL= gb:AK111583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1502011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15010Os.10633.1.S1_at11/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.23253.1.S1_at9/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.7494.1.S1_at1/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15020Os.46044.1.S1_s_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15020Os.46044.2.S1_x_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15039OsAffx.23254.1.S1_x_at11/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039OsAffx.23254.1.S1_at11/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039Os.7348.2.S1_x_at1/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039Os.54835.1.S1_s_at1/111+8444563..8448291pectinesterase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46044.2.S1_x_at--39--3811Chr01:8419945..8419969 (25 bp)
CTCCAGCATCAACCTTTTTAGCATT
LOC_Os01g15020
Os.46044.2.S1_x_at--56--10351Chr01:8419929..8419953 (25 bp)
TTTAGCATTTCACCCTCAAGACAAT
LOC_Os01g15020
Os.46044.2.S1_x_at--769--7951Chr01:8419727..8419751 (25 bp)
GGATAACTGGTTTGGCCTTCTCAAA
LOC_Os01g15020
Os.46044.2.S1_x_at--760--8431Chr01:8419714..8419738 (25 bp)
GGCCTTCTCAAACAACCTACAAATA
LOC_Os01g15020
Os.46044.2.S1_x_at--1022--651Chr01:8419524..8419694 (25 bp)
ATGCACAGCTTTGTGTGTGGGCCAC
LOC_Os01g15020
Os.46044.2.S1_x_at--278--7471Chr01:8419510..8419534 (25 bp)
GTGTGGGCCACCGATACTTGGGAAA
LOC_Os01g15020
Os.46044.2.S1_x_at--138--1691Chr01:8419432..8419456 (25 bp)
ACTTGGGTCCAGTTTAACTCTGACT
LOC_Os01g15020
Os.46044.2.S1_x_at--1026--1091Chr01:8419227..8419251 (25 bp)
AGTGGATACCTCAGGACGCTTTGTC
LOC_Os01g15020
Os.46044.2.S1_x_at--976--10811Chr01:8419207..8419231 (25 bp)
TTGTCAGCTCCCATTTCACATGCAT
LOC_Os01g15020
Os.46044.2.S1_x_at--201--431Chr01:8419184..8419208 (25 bp)
ATCATACTCACGCAACAGCCAGTTG
LOC_Os01g15020
Os.46044.2.S1_x_at--299--10351Chr01:8419158..8419182 (25 bp)
TTTTTGCTGCCTTTACCGATGGTAA
LOC_Os01g15020
Target Sequence 
CTCCAGCATCAACCTTTTTAGCATTTCACCCTCAAGACAATAATATCATAGCAATTGGAATGGAAGATTCAACCATCCAT
ATATACAATGTCAGGGTAGATGAGGTCAAAACTAGATTGAAAGGGCATCAAAGGAGGATAACTGGTTTGGCCTTCTCAAA
CAACCTACAAATACTTGTGTCTTCAGGGGCTGATGCACAGCTTTGTGTGTGGGCCACCGATACTTGGGAAAAGAAAAAAT
CTGTTGCTATTCAAATGCCAGCTGGGAAAACTCCATCAGGGGATACTTGGGTCCAGTTTAACTCTGACTGGAGTCGTTTG
TTAGTAGTACATGAGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGTGGATACCTCAGGACGC
TTTGTCAGCTCCCATTTCACATGCATCATACTCACGCAACAGCCAGTTGGTTTTTGCTGCCTTTACCGATGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46044.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis