Browse Element(s) Details


OsAffx.22225.2.S1_at

Description tigr:9629.m01480
TID=OsAffx.22225.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1499011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14940OsAffx.23252.1.S1_at11/111+8376855..8377388pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g14950Os.3405.1.S1_at11/111+8378917..8384036Importin alpha-1b subunit, putative, expressed
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein
LOC_Os01g14970OsAffx.11058.1.S1_x_at11/111+8391321..8392277hypothetical protein
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15010Os.10633.1.S1_at11/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.23253.1.S1_at9/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.7494.1.S1_at1/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15020Os.46044.1.S1_s_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15020Os.46044.2.S1_x_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22225.2.S1_at--244--3491Chr01:8399071..8399095 (25 bp)
CAGGAGCTTCTTGCTCATGATGGCG
LOC_Os01g14990
OsAffx.22225.2.S1_at--752--1551Chr01:8399067..8399091 (25 bp)
AGCTTCTTGCTCATGATGGCGTGCG
LOC_Os01g14990
OsAffx.22225.2.S1_at--1075--9571Chr01:8399063..8399087 (25 bp)
TCTTGCTCATGATGGCGTGCGTCTG
LOC_Os01g14990
OsAffx.22225.2.S1_at--92--9631Chr01:8399057..8399081 (25 bp)
TCATGATGGCGTGCGTCTGCAGCTG
LOC_Os01g14990
OsAffx.22225.2.S1_at--935--4651Chr01:8399049..8399073 (25 bp)
GCGTGCGTCTGCAGCTGGTCGATCA
LOC_Os01g14990
OsAffx.22225.2.S1_at--59--9151Chr01:8399046..8399070 (25 bp)
TGCGTCTGCAGCTGGTCGATCACTT
LOC_Os01g14990
OsAffx.22225.2.S1_at--492--7171Chr01:8399043..8399067 (25 bp)
GTCTGCAGCTGGTCGATCACTTGCT
LOC_Os01g14990
OsAffx.22225.2.S1_at--873--1611Chr01:8399037..8399061 (25 bp)
AGCTGGTCGATCACTTGCTGCAAAT
LOC_Os01g14990
OsAffx.22225.2.S1_at--298--3911Chr01:8399035..8399059 (25 bp)
CTGGTCGATCACTTGCTGCAAATCA
LOC_Os01g14990
OsAffx.22225.2.S1_at--292--7811Chr01:8399034..8399057 (24 bp)
GGTCGATCACTTGCTGCAAATCAGA
LOC_Os01g14990
OsAffx.22225.2.S1_at--816--9691Chr01:8398936..8399051 (25 bp)
TCACTTGCTGCAAATCAGACGAAGC
LOC_Os01g14990
Target Sequence 
CAGGAGCTTCTTGCTCATGATGGCGTGCGTCTGCAGCTGGTCGATCACTTGCTGCAAATCAGACGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22225.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis